Variant report

Variant	rs335722
Chromosome Location	chr15:76230154-76230155
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76230095..76231887-chr15:76232023..76234158,2	K562	blood:
2	chr15:76225604..76228102-chr15:76229975..76232639,2	MCF-7	breast:
3	chr15:76230088..76234622-chr15:76234992..76238934,7	K562	blood:
4	chr15:76228613..76230905-chr15:76232150..76235048,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1695372	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1699275	0.93[AFR][1000 genomes]
rs2455893	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2455895	1.00[YRI][hapmap]
rs2469037	0.88[YRI][hapmap]
rs335689	1.00[YRI][hapmap]
rs335698	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs335707	1.00[YRI][hapmap]
rs335719	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:76203800-76230200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:76217200-76252000	Weak transcription	Pancreas	Pancrea
8	chr15:76217600-76231800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:76217600-76232600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:76219000-76232200	Weak transcription	Psoas Muscle	Psoas
11	chr15:76219600-76231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:76221000-76230800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr15:76221200-76232200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:76222000-76231800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:76222000-76232200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:76222200-76231600	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:76222800-76233200	Strong transcription	NH-A	brain
18	chr15:76223400-76230400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:76223600-76236200	Weak transcription	Fetal Heart	heart
20	chr15:76224800-76233000	Weak transcription	Fetal Intestine Small	intestine
21	chr15:76224800-76233400	Strong transcription	A549	lung
22	chr15:76225200-76232600	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:76225600-76230800	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:76225800-76231800	Weak transcription	Brain Germinal Matrix	brain
25	chr15:76226400-76236600	Weak transcription	Stomach Mucosa	stomach
26	chr15:76226600-76238600	Weak transcription	NHLF	lung
27	chr15:76226800-76231400	Weak transcription	Thymus	Thymus
28	chr15:76226800-76231600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:76226800-76231600	Weak transcription	Ovary	ovary
30	chr15:76226800-76231600	Weak transcription	Spleen	Spleen
31	chr15:76226800-76231800	Weak transcription	Fetal Stomach	stomach
32	chr15:76226800-76231800	Weak transcription	Lung	lung
33	chr15:76226800-76232000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:76226800-76232200	Weak transcription	Primary T cells from cord blood	blood
35	chr15:76226800-76232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:76226800-76232800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:76226800-76233600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:76226800-76234600	Weak transcription	Adipose Nuclei	Adipose
39	chr15:76226800-76235000	Weak transcription	Fetal Kidney	kidney
40	chr15:76227000-76230600	Weak transcription	Fetal Brain Male	brain
41	chr15:76227000-76231600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:76227000-76231800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:76227000-76232600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr15:76227000-76233400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr15:76227000-76234000	Weak transcription	HepG2	liver
46	chr15:76227200-76232000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:76227600-76232000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr15:76227800-76231000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:76227800-76231600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:76227800-76233000	Weak transcription	Fetal Muscle Trunk	muscle

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