Variant report

Variant	rs33625
Chromosome Location	chr16:12003819-12003820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:12002840..12004929-chr16:12070641..12072308,2	MCF-7	breast:
2	chr16:11982694..11985676-chr16:12003356..12006033,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260488	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12929225	1.00[EUR][1000 genomes]
rs34913195	1.00[EUR][1000 genomes]
rs467106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71385111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043909	chr16:11839910-12007435	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1042660	chr16:11846873-12110435	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv571458	chr16:11925008-12087282	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1735	chr16:11986963-12031597	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv974756	chr16:11999019-12005053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:11962600-12004000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:11966200-12006200	Weak transcription	Fetal Heart	heart
3	chr16:11976600-12004800	Weak transcription	Esophagus	oesophagus
4	chr16:11977000-12007200	Weak transcription	Colonic Mucosa	Colon
5	chr16:11977200-12004600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr16:11981200-12004000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr16:11982000-12007400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:11984600-12006800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr16:11985000-12007000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr16:11987600-12004000	Weak transcription	Brain Angular Gyrus	brain
11	chr16:11987800-12004200	Weak transcription	Fetal Brain Female	brain
12	chr16:11987800-12007600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr16:11987800-12008400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:11988000-12004200	Weak transcription	Fetal Kidney	kidney
15	chr16:11989200-12004000	Weak transcription	Fetal Lung	lung
16	chr16:11989800-12007200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr16:11989800-12007400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr16:11990000-12007400	Weak transcription	Lung	lung
19	chr16:11990600-12004200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr16:11990600-12006600	Weak transcription	Brain Germinal Matrix	brain
21	chr16:11990800-12007000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr16:11991000-12004200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr16:11991000-12004200	Weak transcription	Brain Hippocampus Middle	brain
24	chr16:11991000-12006800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr16:11991000-12007400	Weak transcription	Placenta	Placenta
26	chr16:11991400-12007000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr16:11991600-12004200	Weak transcription	NH-A	brain
28	chr16:11991600-12004200	Weak transcription	NHDF-Ad	bronchial
29	chr16:11991600-12006200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr16:11992000-12007000	Weak transcription	Primary B cells from cord blood	blood
31	chr16:11992200-12007000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr16:11993200-12004000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr16:11993400-12004800	Weak transcription	Right Atrium	heart
34	chr16:11994800-12004200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr16:11994800-12004400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr16:11995000-12004800	Weak transcription	Gastric	stomach
37	chr16:11995200-12004200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr16:11995800-12004200	Weak transcription	Stomach Mucosa	stomach
39	chr16:11996000-12006800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr16:11996800-12004000	Strong transcription	Fetal Thymus	thymus
41	chr16:11997200-12004000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr16:11997200-12006800	Weak transcription	Spleen	Spleen
43	chr16:11997400-12006600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr16:11999400-12004000	Weak transcription	NHLF	lung
45	chr16:11999400-12004200	Weak transcription	Fetal Intestine Large	intestine
46	chr16:11999600-12004800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr16:11999800-12008000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr16:12000000-12007400	Weak transcription	HSMMtube	muscle
49	chr16:12000400-12004600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr16:12000400-12004600	Weak transcription	Fetal Intestine Small	intestine

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