Variant report

Variant	rs336361
Chromosome Location	chr4:142945451-142945452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13133767	0.82[JPT][hapmap]
rs17468315	0.82[JPT][hapmap]
rs3775601	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs59019422	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830096	chr4:142867099-143023761	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428775	chr4:142943213-143050195	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142940600-142948400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:142941800-142957800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:142942000-142953200	Weak transcription	Right Ventricle	heart
4	chr4:142942200-142949000	Weak transcription	Primary T cells from cord blood	blood
5	chr4:142942200-142949000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:142942400-142949200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:142943200-142945600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:142943400-142949000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:142943800-142965400	Weak transcription	Aorta	Aorta
10	chr4:142944000-142948800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:142944200-142948400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:142944200-142955600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:142944200-142958600	Weak transcription	Fetal Intestine Small	intestine
14	chr4:142944200-142962800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:142945200-142946800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:142945400-142951400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:142945400-142954800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:142945400-142983200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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