Variant report

Variant	rs3365
Chromosome Location	chr11:8704711-8704712
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:280)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:280 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr11:8703467-8704850	A549	lung:	n/a	chr11:8704293-8704302
2	FOXM1	chr11:8703490-8704908	GM12878	blood:	n/a	n/a
3	PML	chr11:8703295-8705344	GM12878	blood:	n/a	n/a
4	POLR2A	chr11:8703545-8706440	H1-hESC	embryonic stem cell:	n/a	n/a
5	TBL1XR1	chr11:8703814-8705226	K562	blood:	n/a	n/a
6	ZBTB33	chr11:8703662-8704892	SK-N-SH	brain:	n/a	chr11:8704225-8704240 chr11:8704246-8704256
7	POLR2A	chr11:8702898-8711816	GM12891	blood:	n/a	n/a
8	REST	chr11:8703815-8704788	PFSK-1	brain:	n/a	n/a
9	POLR2A	chr11:8703829-8704877	HepG2	liver:	n/a	n/a
10	ARID3A	chr11:8704088-8705126	K562	blood:	n/a	n/a
11	MXI1	chr11:8703707-8705253	GM12878	blood:	n/a	n/a
12	GABPA	chr11:8703751-8704997	A549	lung:	n/a	chr11:8704293-8704302
13	POLR2A	chr11:8702941-8705349	U87	brain:	n/a	n/a
14	USF2	chr11:8703961-8704942	GM12878	blood:	n/a	chr11:8704782-8704793
15	SP1	chr11:8704643-8705253	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr11:8703038-8705287	SK-N-SH	brain:	n/a	n/a
17	POLR2A	chr11:8702842-8711846	PANC-1	pancreas:	n/a	n/a
18	POLR2A	chr11:8703444-8704900	GM12878	blood:	n/a	n/a
19	TBP	chr11:8703145-8705218	K562	blood:	n/a	n/a
20	BCL3	chr11:8703845-8705247	A549	lung:	n/a	chr11:8704273-8704282 chr11:8703878-8703891 chr11:8704478-8704491
21	HEY1	chr11:8703634-8705468	K562	blood:	n/a	n/a
22	MAX	chr11:8703537-8705234	HepG2	liver:	n/a	n/a
23	BHLHE40	chr11:8703592-8705016	K562	blood:	n/a	n/a
24	NFATC1	chr11:8703617-8705065	GM12878	blood:	n/a	n/a
25	MYC	chr11:8703640-8705906	K562	blood:	n/a	n/a
26	POLR2A	chr11:8703371-8705075	GM15510	blood:	n/a	n/a
27	SIN3A	chr11:8703615-8705315	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr11:8703058-8706516	MCF-7	breast:	n/a	n/a
29	MAX	chr11:8703657-8704859	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr11:8703460-8705160	K562	blood:	n/a	n/a
31	POLR2A	chr11:8703759-8704782	GM10847	blood:	n/a	n/a
32	MTA3	chr11:8703154-8705188	GM12878	blood:	n/a	n/a
33	ZBTB33	chr11:8703454-8705284	A549	lung:	n/a	chr11:8704225-8704240 chr11:8704246-8704256
34	POLR2A	chr11:8703294-8705940	H1-hESC	embryonic stem cell:	n/a	n/a
35	MAX	chr11:8703748-8704848	SK-N-SH	brain:	n/a	n/a
36	POLR2A	chr11:8702955-8706133	HCT-116	colon:	n/a	n/a
37	USF1	chr11:8704699-8704892	HepG2	liver:	n/a	n/a
38	KAP1	chr11:8703907-8705049	U2OS	brain:	n/a	n/a
39	POLR2A	chr11:8703141-8706692	GM19099	blood:	n/a	n/a
40	POLR2A	chr11:8702869-8705408	K562	blood:	n/a	n/a
41	SPI1	chr11:8703770-8704785	GM12878	blood:	n/a	chr11:8704203-8704212 chr11:8704200-8704213 chr11:8704204-8704211 chr11:8704200-8704213
42	REST	chr11:8703445-8705081	H1-neurons	neurons:	n/a	n/a
43	POLR2A	chr11:8703029-8707716	GM12891	blood:	n/a	n/a
44	TAF1	chr11:8703715-8704923	HepG2	liver:	n/a	n/a
45	POLR2A	chr11:8702826-8712230	PFSK-1	brain:	n/a	n/a
46	ELF1	chr11:8703808-8704790	A549	lung:	n/a	chr11:8704201-8704212
47	MAX	chr11:8703828-8704831	K562	blood:	n/a	n/a
48	TAF1	chr11:8703700-8704809	SK-N-SH	brain:	n/a	n/a
49	POLR2A	chr11:8703024-8705855	GM12892	blood:	n/a	n/a
50	ELK4	chr11:8703560-8704921	Hela-S3	cervix:	n/a	chr11:8704272-8704283 chr11:8704273-8704282 chr11:8704273-8704281

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:8702870..8705880-chr11:8738952..8743089,6	MCF-7	breast:
2	chr11:8638813..8643565-chr11:8702244..8705036,4	K562	blood:
3	chr11:8703166..8704942-chr11:8987139..8989652,2	K562	blood:
4	chr11:8703786..8704731-chr9:86594490..86595278,2	Hela-S3	cervix:
5	chr11:8703906..8704816-chr12:6601962..6602836,2	Hela-S3	cervix:
6	chr11:8701660..8705909-chr11:8738922..8746228,9	MCF-7	breast:
7	chr11:8702711..8705833-chr11:8931238..8933056,3	K562	blood:
8	chr11:8702257..8705886-chr11:8931185..8934379,5	MCF-7	breast:
9	chr11:8703859..8704715-chr2:101925167..101926061,2	Hela-S3	cervix:
10	chr1:144533694..144534331-chr11:8704322..8705067,2	Hela-S3	cervix:
11	chr11:8704207..8704848-chr16:3070319..3070942,2	Hela-S3	cervix:
12	chr11:8704228..8705954-chr11:9023702..9025627,2	K562	blood:
13	chr11:8704319..8705885-chr11:8789262..8791873,2	MCF-7	breast:
14	chr11:8703102..8705784-chr11:8929556..8931487,2	MCF-7	breast:
15	chr11:8704163..8704892-chr12:49524653..49525239,2	Hela-S3	cervix:
16	chr11:8703116..8705137-chr11:8986069..8987859,2	K562	blood:
17	chr11:8703341..8705421-chr14:100549196..100551479,2	MCF-7	breast:
18	chr1:223316576..223317123-chr11:8704194..8704831,2	NB4	blood:
19	chr1:152020051..152020614-chr11:8704065..8704810,2	Hela-S3	cervix:
20	chr11:8614018..8615815-chr11:8704377..8705921,2	MCF-7	breast:
21	chr1:46016057..46016984-chr11:8704263..8704927,2	HCT-116	colon:

No data

Variant related genes	Relation type
RPL27A	TF binding region
SNORA3	TF binding region
SNORA45	TF binding region
ENSG00000175352	Chromatin interaction
ENSG00000258017	Chromatin interaction
ENSG00000165119	Chromatin interaction
ENSG00000196405	Chromatin interaction
ENSG00000264857	Chromatin interaction
ENSG00000163191	Chromatin interaction
ENSG00000006327	Chromatin interaction
ENSG00000166452	Chromatin interaction
ENSG00000187554	Chromatin interaction
ENSG00000123416	Chromatin interaction
ENSG00000111639	Chromatin interaction
ENSG00000175348	Chromatin interaction
ENSG00000166444	Chromatin interaction
ENSG00000130413	Chromatin interaction
ENSG00000010292	Chromatin interaction
ENSG00000117448	Chromatin interaction
ENSG00000255159	Chromatin interaction
ENSG00000201699	Chromatin interaction
ENSG00000166436	Chromatin interaction
ENSG00000254860	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2653558	1.00[CHB][hapmap]
rs3850934	1.00[CHB][hapmap]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs3365	RPL27A	cis	parietal	SCAN
rs3365	TRIM22	cis	cerebellum	SCAN
rs3365	RPL27A	cis	cerebellum	SCAN
rs3365	ST5	cis	cerebellum	SCAN
rs3365	STK33	cis	cerebellum	SCAN
rs3365	SCUBE2	cis	parietal	SCAN
rs3365	ASCL3	cis	parietal	SCAN
rs3365	SNORA45	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8703000-8705000	Active TSS	H1 Cell Line	embryonic stem cell
2	chr11:8703000-8705000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:8703000-8705400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:8703200-8704800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:8703200-8704800	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr11:8703200-8705000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:8703200-8705000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:8703200-8705000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:8703200-8705000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:8703200-8705000	Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr11:8703200-8705000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:8703200-8705200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr11:8703200-8705200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr11:8703200-8705600	Active TSS	Right Ventricle	heart
15	chr11:8703200-8705600	Active TSS	GM12878-XiMat	blood
16	chr11:8703200-8705600	Active TSS	HSMMtube	muscle
17	chr11:8703200-8705800	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr11:8703400-8704800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:8703400-8704800	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr11:8703400-8704800	Active TSS	Brain Substantia Nigra	brain
21	chr11:8703400-8705000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:8703400-8705000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr11:8703400-8705000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr11:8703400-8705000	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr11:8703400-8705000	Active TSS	Muscle Satellite Cultured Cells	--
26	chr11:8703400-8705000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:8703400-8705000	Active TSS	Fetal Kidney	kidney
28	chr11:8703400-8705000	Active TSS	Psoas Muscle	Psoas
29	chr11:8703400-8705000	Active TSS	Stomach Mucosa	stomach
30	chr11:8703400-8705200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:8703400-8705200	Active TSS	Fetal Intestine Small	intestine
32	chr11:8703400-8705200	Active TSS	Lung	lung
33	chr11:8703400-8705200	Active TSS	Pancreas	Pancrea
34	chr11:8703400-8705200	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr11:8703400-8705400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:8703400-8705400	Active TSS	Aorta	Aorta
37	chr11:8703400-8705400	Active TSS	Esophagus	oesophagus
38	chr11:8703400-8705600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:8703400-8705600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:8703400-8705600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:8703400-8705600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:8703400-8705600	Active TSS	Fetal Intestine Large	intestine
43	chr11:8703400-8705600	Active TSS	Gastric	stomach
44	chr11:8703400-8705600	Active TSS	Ovary	ovary
45	chr11:8703400-8705600	Active TSS	HSMM	muscle
46	chr11:8703400-8705600	Active TSS	NHDF-Ad	bronchial
47	chr11:8703400-8705800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr11:8703400-8705800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:8703600-8704800	Active TSS	Brain Angular Gyrus	brain
50	chr11:8703600-8704800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links