Variant report

Variant	rs337529
Chromosome Location	chr9:101449433-101449434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101313147..101314853-chr9:101446937..101449701,2	MCF-7	breast:
2	chr9:101447110..101449995-chr9:101451579..101454176,2	K562	blood:
3	chr9:101447860..101450786-chr9:101503921..101506434,3	MCF-7	breast:
4	chr9:101391170..101393499-chr9:101447664..101449691,2	MCF-7	breast:
5	chr9:101446403..101449321-chr9:101449339..101451432,2	MCF-7	breast:
6	chr9:101442931..101444662-chr9:101446701..101449457,2	MCF-7	breast:
7	chr9:101375563..101377674-chr9:101448863..101451111,2	K562	blood:
8	chr9:101448152..101451282-chr9:101454480..101457051,3	MCF-7	breast:
9	chr9:101448046..101450706-chr9:101462440..101466527,4	MCF-7	breast:

No data

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10122306	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10435850	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10435898	0.91[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs10481694	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10512258	0.92[CHB][hapmap]
rs10739681	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1167773	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs1547271	1.00[CEU][hapmap]
rs1571926	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1571928	0.91[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1571931	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1758793	0.90[EUR][1000 genomes]
rs1930138	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1953058	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1977580	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1977581	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2095078	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2151072	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2151073	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2151074	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2183972	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2418209	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2778914	0.83[CEU][hapmap];0.88[MEX][hapmap];0.83[EUR][1000 genomes]
rs2778917	0.83[CEU][hapmap];0.88[MEX][hapmap];0.85[EUR][1000 genomes]
rs2779541	0.83[CEU][hapmap];0.88[MEX][hapmap];0.85[EUR][1000 genomes]
rs2900546	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs337525	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs337530	1.00[CEU][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs337531	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs337532	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs337536	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs337537	0.85[ASN][1000 genomes]
rs337539	0.92[CHB][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.85[ASN][1000 genomes]
rs337540	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337541	0.92[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs337542	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337543	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337549	0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs337553	0.84[ASN][1000 genomes]
rs337554	0.83[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs337556	0.83[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs337557	0.83[CHB][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs337559	0.92[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs337560	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337561	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3808896	0.82[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs3983397	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs405430	0.81[ASN][1000 genomes]
rs415902	0.81[ASN][1000 genomes]
rs4517239	0.85[TSI][hapmap]
rs4743246	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743247	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743251	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743253	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743256	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743259	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743260	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743261	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4743265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs507876	0.81[ASN][1000 genomes]
rs509747	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs516930	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs529269	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs570138	0.83[JPT][hapmap]
rs6478797	0.83[CEU][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6478810	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs7388933	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7852418	0.91[CEU][hapmap]
rs7856945	0.91[CEU][hapmap];0.82[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7863368	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7869909	0.88[CEU][hapmap];0.85[CHD][hapmap]
rs7870104	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7870263	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs914661	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs914666	1.00[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs914667	1.00[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs914668	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9299312	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9299313	0.81[CEU][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv893616	chr9:101371017-101472921	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101448000-101451800	Enhancers	Placenta	Placenta
2	chr9:101448400-101450200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:101448400-101451200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:101448800-101449800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:101449000-101449600	Enhancers	HUVEC	blood vessel
6	chr9:101449000-101450400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101449200-101449600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr9:101449200-101449600	Enhancers	Fetal Kidney	kidney
9	chr9:101449200-101449800	Enhancers	Pancreas	Pancrea
10	chr9:101449200-101450400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:101449200-101468400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:101449400-101449800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr9:101449400-101451200	Enhancers	Placenta Amnion	Placenta Amnion

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