The 2.0 version of rSNPBase

Variant report

Variant rs338232
Chromosome Location chr1:58939335-58939336
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58918400-58974000 Weak transcription Spleen Spleen
2 chr1:58923200-58954200 Weak transcription Pancreas Pancrea
3 chr1:58925000-58942400 Weak transcription Primary hematopoietic stem cells blood
4 chr1:58926400-58942800 Weak transcription Primary T cells fromperipheralblood blood
5 chr1:58927400-58943200 Weak transcription Primary B cells from cord blood blood
6 chr1:58928600-58945800 Weak transcription Aorta Aorta
7 chr1:58929000-58954600 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:58930400-58945800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:58930400-58949400 Weak transcription Primary neutrophils fromperipheralblood blood
10 chr1:58931000-58954200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:58931000-58954600 Weak transcription Fetal Intestine Large intestine
12 chr1:58931000-58954800 Weak transcription Gastric stomach
13 chr1:58931000-58977000 Weak transcription Rectal Smooth Muscle rectum
14 chr1:58931200-58952600 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr1:58931200-58969400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:58931600-58974000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:58932200-58945800 Weak transcription Adipose Nuclei Adipose
19 chr1:58932400-58947400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:58932600-58946000 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr1:58932600-58947400 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr1:58932600-58947600 Weak transcription Dnd41 blood
23 chr1:58932600-58948400 Weak transcription Fetal Stomach stomach
24 chr1:58932600-58954600 Weak transcription Fetal Muscle Trunk muscle
25 chr1:58932600-58974200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:58932600-58977000 Weak transcription HSMMtube muscle
27 chr1:58932800-58954000 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:58932800-58954200 Weak transcription Brain Inferior Temporal Lobe brain
29 chr1:58932800-58968000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:58933000-58943200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:58933000-58945800 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr1:58933000-58954200 Weak transcription Fetal Intestine Small intestine
33 chr1:58933000-58954400 Weak transcription Duodenum Mucosa Duodenum
34 chr1:58933400-58948000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:58933400-58948800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:58933800-58984800 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr1:58934600-58948800 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr1:58934600-58954600 Weak transcription Esophagus oesophagus
39 chr1:58934600-58954600 Weak transcription Lung lung
40 chr1:58934600-58968000 Weak transcription Brain Hippocampus Middle brain
41 chr1:58934600-58974000 Weak transcription Right Ventricle heart
42 chr1:58934800-58942600 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr1:58934800-58945000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:58934800-58945200 Weak transcription Primary T helper cells fromperipheralblood blood
45 chr1:58934800-58945200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
46 chr1:58934800-58945800 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:58934800-58945800 Weak transcription Ovary ovary
48 chr1:58934800-58948800 Weak transcription Stomach Smooth Muscle stomach
49 chr1:58934800-58954200 Weak transcription Primary hematopoietic stem cells short term culture blood
50 chr1:58934800-58954800 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015