The 2.0 version of rSNPBase

Variant report

Variant rs338238
Chromosome Location chr1:58935110-58935111
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58918400-58974000 Weak transcription Spleen Spleen
2 chr1:58923200-58954200 Weak transcription Pancreas Pancrea
3 chr1:58925000-58942400 Weak transcription Primary hematopoietic stem cells blood
4 chr1:58926400-58942800 Weak transcription Primary T cells fromperipheralblood blood
5 chr1:58927400-58943200 Weak transcription Primary B cells from cord blood blood
6 chr1:58928600-58945800 Weak transcription Aorta Aorta
7 chr1:58929000-58954600 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:58930400-58945800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:58930400-58949400 Weak transcription Primary neutrophils fromperipheralblood blood
10 chr1:58931000-58954200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:58931000-58954600 Weak transcription Fetal Intestine Large intestine
12 chr1:58931000-58954800 Weak transcription Gastric stomach
13 chr1:58931000-58977000 Weak transcription Rectal Smooth Muscle rectum
14 chr1:58931200-58952600 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr1:58931200-58969400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:58931600-58974000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:58932000-58935600 Weak transcription Colonic Mucosa Colon
19 chr1:58932200-58945800 Weak transcription Adipose Nuclei Adipose
20 chr1:58932400-58947400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr1:58932600-58946000 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr1:58932600-58947400 Weak transcription Pancreatic Islets Pancreatic Islet
23 chr1:58932600-58947600 Weak transcription Dnd41 blood
24 chr1:58932600-58948400 Weak transcription Fetal Stomach stomach
25 chr1:58932600-58954600 Weak transcription Fetal Muscle Trunk muscle
26 chr1:58932600-58974200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:58932600-58977000 Weak transcription HSMMtube muscle
28 chr1:58932800-58954000 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:58932800-58954200 Weak transcription Brain Inferior Temporal Lobe brain
30 chr1:58932800-58968000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:58933000-58935400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr1:58933000-58935600 Weak transcription Brain Anterior Caudate brain
33 chr1:58933000-58943200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:58933000-58945800 Weak transcription Primary T helper cells PMA-I stimulated --
35 chr1:58933000-58954200 Weak transcription Fetal Intestine Small intestine
36 chr1:58933000-58954400 Weak transcription Duodenum Mucosa Duodenum
37 chr1:58933400-58948000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr1:58933400-58948800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr1:58933800-58935600 Enhancers Fetal Heart heart
40 chr1:58933800-58984800 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr1:58934200-58935400 Strong transcription Primary B cells from peripheral blood blood
42 chr1:58934600-58936800 Weak transcription Primary T cells from cord blood blood
43 chr1:58934600-58948800 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:58934600-58954600 Weak transcription Esophagus oesophagus
45 chr1:58934600-58954600 Weak transcription Lung lung
46 chr1:58934600-58968000 Weak transcription Brain Hippocampus Middle brain
47 chr1:58934600-58974000 Weak transcription Right Ventricle heart
48 chr1:58934800-58942600 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:58934800-58945000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr1:58934800-58945200 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015