Variant report

Variant	rs338660
Chromosome Location	chr5:113771811-113771812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17136599	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs72801834	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113769800-113774200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:113769800-113774600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:113769800-113776200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:113770000-113772400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:113770000-113772600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:113770000-113774400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:113770600-113782200	Weak transcription	Liver	Liver
8	chr5:113770600-113784600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:113770800-113772400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:113770800-113772400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:113771000-113773800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:113771200-113773800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:113771600-113772000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:113771600-113772000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:113771600-113772000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:113771600-113772000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:113771600-113772000	Enhancers	Fetal Heart	heart
18	chr5:113771800-113772000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:113771800-113772800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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