Variant report

Variant	rs33943110
Chromosome Location	chr6:24357796-24357797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72833015	1.00[ASN][1000 genomes]
rs72833022	1.00[ASN][1000 genomes]
rs72833036	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73727530	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24353200-24358800	Active TSS	Fetal Kidney	kidney
2	chr6:24354200-24358800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:24354800-24358800	Active TSS	A549	lung
4	chr6:24355600-24357800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:24356800-24358000	Active TSS	Fetal Intestine Large	intestine
6	chr6:24356800-24358400	Bivalent/Poised TSS	Fetal Lung	lung
7	chr6:24357000-24358200	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:24357000-24358400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:24357000-24358400	Bivalent/Poised TSS	HepG2	liver
10	chr6:24357000-24358600	Active TSS	Fetal Intestine Small	intestine
11	chr6:24357200-24357800	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
12	chr6:24357200-24357800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:24357200-24358000	Weak transcription	Brain Anterior Caudate	brain
14	chr6:24357400-24357800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:24357400-24357800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:24357400-24358200	Bivalent/Poised TSS	Fetal Stomach	stomach
17	chr6:24357400-24358800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr6:24357400-24358800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:24357400-24359800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:24357600-24357800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:24357600-24357800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:24357600-24357800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr6:24357600-24357800	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:24357600-24357800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:24357600-24357800	Active TSS	Liver	Liver
26	chr6:24357600-24357800	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:24357600-24357800	Active TSS	Colonic Mucosa	Colon
28	chr6:24357600-24357800	Enhancers	Gastric	stomach
29	chr6:24357600-24357800	Active TSS	Lung	lung
30	chr6:24357600-24357800	Enhancers	Ovary	ovary
31	chr6:24357600-24357800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:24357600-24357800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:24357600-24358000	Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr6:24357600-24358000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:24357600-24358000	Active TSS	Rectal Mucosa Donor 31	rectum
36	chr6:24357600-24358000	Enhancers	Right Ventricle	heart
37	chr6:24357600-24358000	Active TSS	Stomach Smooth Muscle	stomach
38	chr6:24357600-24358000	Bivalent/Poised TSS	NHEK	skin
39	chr6:24357600-24358200	Flanking Bivalent TSS/Enh	Placenta	Placenta
40	chr6:24357600-24358200	Flanking Active TSS	Pancreas	Pancrea
41	chr6:24357600-24358400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:24357600-24358400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
43	chr6:24357600-24358600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
44	chr6:24357600-24358600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:24357600-24358600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:24357600-24358600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:24357600-24358800	Active TSS	Rectal Smooth Muscle	rectum
48	chr6:24357600-24358800	Enhancers	Spleen	Spleen

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