Variant report

Variant	rs33948978
Chromosome Location	chr5:118870662-118870663
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118863717..118866521-chr5:118868164..118871056,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1016271	chr5:118836891-119487982	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv882776	chr5:118859546-118915408	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv882777	chr5:118870452-118981480	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2547335	chr5:118870662-118870662	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv306570	chr5:118870662-118870662	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2347843	chr5:118870662-118870663	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118804200-118879600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:118832400-118878200	Weak transcription	NH-A	brain
3	chr5:118840200-118878400	Weak transcription	Psoas Muscle	Psoas
4	chr5:118841000-118880000	Weak transcription	Brain Germinal Matrix	brain
5	chr5:118841200-118880000	Weak transcription	A549	lung
6	chr5:118841400-118873200	Weak transcription	Fetal Brain Male	brain
7	chr5:118846800-118878200	Weak transcription	NHLF	lung
8	chr5:118847200-118873200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:118847200-118877800	Weak transcription	Small Intestine	intestine
10	chr5:118847200-118878200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:118847200-118879800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:118847400-118872000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:118847400-118873000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr5:118847400-118873200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr5:118847400-118873800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:118847400-118875800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr5:118847400-118876000	Weak transcription	Colonic Mucosa	Colon
18	chr5:118847400-118878200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr5:118847400-118879800	Weak transcription	HSMMtube	muscle
20	chr5:118847600-118873200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:118847600-118873400	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:118847600-118873600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:118847600-118877600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:118847600-118878200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:118847600-118879800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr5:118851800-118876400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:118852800-118878200	Weak transcription	Aorta	Aorta
28	chr5:118853000-118880200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:118853400-118878200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:118853400-118878200	Weak transcription	Esophagus	oesophagus
31	chr5:118853400-118878200	Weak transcription	Gastric	stomach
32	chr5:118854200-118875600	Weak transcription	Pancreas	Pancrea
33	chr5:118854400-118877600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:118854400-118878400	Weak transcription	Spleen	Spleen
35	chr5:118854400-118879600	Weak transcription	Fetal Kidney	kidney
36	chr5:118854400-118880600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr5:118854800-118875600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:118854800-118877600	Weak transcription	Fetal Intestine Small	intestine
39	chr5:118854800-118878200	Weak transcription	Thymus	Thymus
40	chr5:118855200-118873200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr5:118855400-118874200	Weak transcription	Ovary	ovary
42	chr5:118855400-118875800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr5:118855400-118876400	Weak transcription	Lung	lung
44	chr5:118855600-118873200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr5:118855600-118878200	Weak transcription	Fetal Stomach	stomach
46	chr5:118856200-118872800	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:118856200-118874200	Weak transcription	Left Ventricle	heart
48	chr5:118856200-118878400	Weak transcription	Right Ventricle	heart
49	chr5:118857200-118878200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr5:118860400-118876000	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links