Variant report

Variant	rs33966405
Chromosome Location	chr16:81474379-81474380
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11647938	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16955356	0.87[ASN][1000 genomes]
rs56361047	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72835186	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81471800-81477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr16:81472000-81476000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr16:81472200-81474400	Weak transcription	A549	lung
4	chr16:81472200-81476200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr16:81472200-81476600	Weak transcription	Fetal Thymus	thymus
6	chr16:81472400-81474600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:81472400-81477000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr16:81472800-81475200	Enhancers	Ovary	ovary
9	chr16:81472800-81476000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr16:81473000-81475800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:81473000-81477000	Weak transcription	Dnd41	blood
12	chr16:81473800-81474400	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr16:81474000-81477200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:81474000-81477400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr16:81474200-81474400	Weak transcription	Fetal Lung	lung
16	chr16:81474200-81474400	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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