Variant report

Variant	rs33981819
Chromosome Location	chr11:66079361-66079362
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:369)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:369 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr11:66079333-66079805	A549	lung:	n/a	chr11:66079455-66079474
2	TCF12	chr11:66079117-66080980	A549	lung:	n/a	n/a
3	ELF1	chr11:66079307-66080542	GM12878	blood:	n/a	chr11:66080301-66080313 chr11:66080472-66080484 chr11:66080431-66080440 chr11:66080488-66080500
4	MTA3	chr11:66079243-66080214	GM12878	blood:	n/a	n/a
5	CTCF	chr11:66079280-66080029	GM19239	blood:	n/a	chr11:66079797-66079806
6	YY1	chr11:66079214-66079871	GM12892	blood:	n/a	chr11:66079455-66079474
7	CTCF	chr11:66079340-66079490	AG04449	skin:	n/a	n/a
8	CTCF	chr11:66079360-66079510	MCF-7	breast:	n/a	n/a
9	CTCF	chr11:66079340-66079490	AG10803	skin:	n/a	n/a
10	CTCF	chr11:66079360-66079510	AG09309	skin:	n/a	n/a
11	MAZ	chr11:66078983-66082726	IMR90	lung:	n/a	chr11:66079055-66079065 chr11:66079691-66079701 chr11:66080016-66080025 chr11:66080324-66080334 chr11:66080231-66080241
12	CTCF	chr11:66079320-66079470	GM12870	blood:	n/a	n/a
13	FOSL2	chr11:66079139-66080122	A549	lung:	n/a	n/a
14	CTCF	chr11:66079306-66079586	Fibrobl	skin:	n/a	n/a
15	CTCF	chr11:66079360-66079510	HEK293	kidney:	n/a	n/a
16	CTCF	chr11:66079340-66079490	GM06990	blood:	n/a	n/a
17	TCF12	chr11:66079166-66081544	SK-N-SH	brain:	n/a	n/a
18	CTCF	chr11:66079360-66079510	GM12864	blood:	n/a	n/a
19	RAD21	chr11:66079224-66080030	SK-N-SH_RA	brain:	n/a	n/a
20	MXI1	chr11:66079355-66080052	H1-hESC	embryonic stem cell:	n/a	chr11:66079432-66079441
21	MAX	chr11:66079133-66080358	A549	lung:	n/a	chr11:66079691-66079701 chr11:66080016-66080025 chr11:66080324-66080334 chr11:66080231-66080241
22	CTCF	chr11:66079340-66079490	AG04450	lung:	n/a	n/a
23	CTCF	chr11:66079340-66079490	HCFaa	heart:	n/a	n/a
24	CTCF	chr11:66079340-66079490	GM12866	blood:	n/a	n/a
25	POLR2A	chr11:66079349-66080013	HCT-116	colon:	n/a	n/a
26	MAX	chr11:66079211-66080377	MCF-7	breast:	n/a	chr11:66079691-66079701 chr11:66080016-66080025 chr11:66080324-66080334 chr11:66080231-66080241
27	CTCF	chr11:66079220-66079715	T-47D	breast:	n/a	n/a
28	CTCF	chr11:66079360-66079510	HepG2	liver:	n/a	n/a
29	MAX	chr11:66079281-66080989	SK-N-SH	brain:	n/a	chr11:66079691-66079701 chr11:66080016-66080025 chr11:66080324-66080334 chr11:66080231-66080241
30	YY1	chr11:66079312-66079587	K562	blood:	n/a	chr11:66079455-66079474
31	BRCA1	chr11:66079329-66079516	HepG2	liver:	n/a	n/a
32	CTCF	chr11:66079340-66079490	MCF-7	breast:	n/a	n/a
33	CTCF	chr11:66079187-66079659	A549	lung:	n/a	n/a
34	RUNX3	chr11:66079218-66080498	GM12878	blood:	n/a	n/a
35	RAD21	chr11:66079248-66079704	K562	blood:	n/a	n/a
36	CTCF	chr11:66079340-66079490	NHEK	skin:	n/a	n/a
37	CHD2	chr11:66079329-66080631	Hela-S3	cervix:	n/a	n/a
38	USF2	chr11:66079257-66079681	H1-hESC	embryonic stem cell:	n/a	n/a
39	GTF2F1	chr11:66079345-66080497	Hela-S3	cervix:	n/a	n/a
40	CTCF	chr11:66079283-66079593	GM10248	blood:	n/a	n/a
41	ZNF263	chr11:66079309-66079847	HEK293-T-REx	kidney:	n/a	n/a
42	TAF1	chr11:66079311-66079842	SK-N-SH	brain:	n/a	n/a
43	RAD21	chr11:66079222-66079714	GM12878	blood:	n/a	n/a
44	CTCF	chr11:66079300-66079450	HMEC	breast:	n/a	n/a
45	YY1	chr11:66079336-66079664	H1-hESC	embryonic stem cell:	n/a	chr11:66079455-66079474
46	GATA2	chr11:66079318-66079745	HUVEC	blood vessel:	n/a	n/a
47	ARID3A	chr11:66079316-66079868	HepG2	liver:	n/a	chr11:66079440-66079448
48	CEBPB	chr11:66079337-66079790	GM12878	blood:	n/a	n/a
49	RAD21	chr11:66079323-66079574	K562	blood:	n/a	n/a
50	RAD21	chr11:66079243-66079957	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66078628..66080981-chr11:66247770..66249627,2	K562	blood:
2	chr11:66077296..66081246-chr11:66109722..66112526,4	K562	blood:
3	chr11:66077376..66081785-chr11:66101114..66107038,7	MCF-7	breast:
4	chr11:66050790..66053564-chr11:66079260..66081695,2	MCF-7	breast:
5	chr11:66078992..66080256-chr11:66103794..66104743,5	K562	blood:
6	chr11:66078215..66080508-chr11:66113999..66115962,2	K562	blood:
7	chr11:66079013..66079935-chr11:66095156..66096312,9	MCF-7	breast:
8	chr11:66079192..66079777-chr11:66103878..66104701,2	MCF-7	breast:
9	chr11:66078962..66079655-chr11:66098111..66098921,2	K562	blood:
10	chr11:66079201..66079876-chr20:52806072..52806869,2	MCF-7	breast:
11	chr11:66078237..66081093-chr11:66098609..66103641,6	K562	blood:
12	chr11:66070320..66072378-chr11:66078030..66080225,2	K562	blood:
13	chr11:66079025..66079721-chr11:66089471..66090121,2	K562	blood:
14	chr11:66054404..66057808-chr11:66078165..66081775,4	MCF-7	breast:
15	chr11:66079352..66079861-chr11:66156292..66157199,2	MCF-7	breast:
16	chr11:66079011..66083261-chr11:66109999..66114385,7	MCF-7	breast:
17	chr11:66064946..66066447-chr11:66077154..66079441,2	K562	blood:
18	chr11:66078877..66081854-chr11:66383426..66384938,2	K562	blood:
19	chr11:66079011..66079863-chr11:66175658..66176448,3	MCF-7	breast:
20	chr11:66078878..66081845-chr11:66137612..66139742,3	K562	blood:
21	chr11:66079009..66079940-chr11:66153342..66154110,2	MCF-7	breast:
22	chr11:66077617..66079568-chr11:66109722..66112583,2	K562	blood:
23	chr11:66078412..66081908-chr11:66138198..66140974,6	K562	blood:
24	chr11:66055377..66058165-chr11:66078171..66080132,2	K562	blood:
25	chr11:66077239..66082197-chr11:66111995..66115447,5	MCF-7	breast:
26	chr11:66078971..66079924-chr11:66095503..66096422,4	K562	blood:
27	chr11:66024193..66026302-chr11:66078513..66080542,2	K562	blood:
28	chr11:66079039..66079987-chr11:66103811..66104945,4	MCF-7	breast:
29	chr11:66053947..66059144-chr11:66077550..66083439,18	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254458	TF binding region
ENSG00000254756	Chromatin interaction
ENSG00000174669	Chromatin interaction
ENSG00000174996	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000174744	Chromatin interaction
ENSG00000174851	Chromatin interaction
ENSG00000174791	Chromatin interaction
ENSG00000254986	Chromatin interaction
ENSG00000174684	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000255468	Chromatin interaction
ENSG00000254736	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12417758	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3741367	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741368	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4930354	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs523583	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891388	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66974947	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66077600-66079400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:66078600-66079400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:66078600-66079400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:66078600-66079400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr11:66078600-66079400	Enhancers	Placenta	Placenta
6	chr11:66078600-66079400	Enhancers	Fetal Thymus	thymus
7	chr11:66078800-66079400	Enhancers	Fetal Muscle Leg	muscle
8	chr11:66079000-66079400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr11:66079000-66079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:66079000-66079400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:66079000-66079400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:66079000-66079400	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:66079000-66079400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr11:66079000-66079400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:66079000-66079400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr11:66079000-66079400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:66079000-66079400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:66079000-66079400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr11:66079000-66079400	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:66079000-66079400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:66079000-66079400	Enhancers	Fetal Stomach	stomach
22	chr11:66079000-66079400	Enhancers	Stomach Mucosa	stomach
23	chr11:66079000-66079400	Flanking Active TSS	Hela-S3	cervix
24	chr11:66079000-66079400	Enhancers	HMEC	breast
25	chr11:66079000-66079400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr11:66079000-66079600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:66079000-66080000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:66079000-66081200	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr11:66079000-66081200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:66079200-66079400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:66079200-66079400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:66079200-66079400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr11:66079200-66079400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr11:66079200-66079400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:66079200-66079400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr11:66079200-66079400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:66079200-66079400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:66079200-66079400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr11:66079200-66079400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
40	chr11:66079200-66079400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:66079200-66079400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:66079200-66079400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:66079200-66079400	Enhancers	Adipose Nuclei	Adipose
44	chr11:66079200-66079400	Enhancers	Liver	Liver
45	chr11:66079200-66079400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
46	chr11:66079200-66079400	Enhancers	Colonic Mucosa	Colon
47	chr11:66079200-66079400	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr11:66079200-66079400	Flanking Active TSS	Fetal Intestine Large	intestine
49	chr11:66079200-66079400	Enhancers	Fetal Lung	lung
50	chr11:66079200-66079400	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links