Variant report

Variant	rs33999043
Chromosome Location	chr3:136100040-136100041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1145101	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs503973	0.82[AFR][1000 genomes]
rs610860	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61789642	1.00[ASN][1000 genomes]
rs61789643	1.00[ASN][1000 genomes]
rs6439640	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6779727	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs696517	0.82[EUR][1000 genomes]
rs9861150	0.82[AMR][1000 genomes]
rs9867368	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv877522	chr3:136088038-136241028	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv238089	chr3:136098002-136105895	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136054600-136172000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:136055600-136100800	Weak transcription	Spleen	Spleen
3	chr3:136063400-136139000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr3:136063400-136139000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:136063600-136105600	Weak transcription	Gastric	stomach
6	chr3:136063600-136110600	Weak transcription	Small Intestine	intestine
7	chr3:136063600-136139200	Weak transcription	Pancreas	Pancrea
8	chr3:136067600-136109000	Weak transcription	HUVEC	blood vessel
9	chr3:136068600-136103800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:136069400-136121200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:136069600-136107400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:136069600-136138800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:136069600-136139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:136069800-136106600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:136069800-136118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:136069800-136159600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:136070600-136101000	Weak transcription	Right Ventricle	heart
18	chr3:136070600-136105800	Weak transcription	Psoas Muscle	Psoas
19	chr3:136070800-136112200	Weak transcription	Aorta	Aorta
20	chr3:136070800-136121400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:136072800-136100400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:136075000-136137800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:136075400-136108000	Weak transcription	Fetal Brain Female	brain
24	chr3:136075600-136105800	Weak transcription	Ovary	ovary
25	chr3:136075800-136160200	Weak transcription	Brain Germinal Matrix	brain
26	chr3:136079400-136174200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:136081200-136118800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:136083200-136111400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:136084400-136123200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:136085400-136104200	Weak transcription	GM12878-XiMat	blood
31	chr3:136085600-136116400	Weak transcription	Fetal Intestine Large	intestine
32	chr3:136085800-136100400	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:136085800-136100800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr3:136085800-136116400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:136085800-136139200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:136085800-136174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:136086000-136112200	Weak transcription	Liver	Liver
38	chr3:136086000-136128400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr3:136086000-136136000	Weak transcription	HSMM	muscle
40	chr3:136086200-136174800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:136086400-136116800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:136088200-136106400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr3:136088400-136121200	Weak transcription	Thymus	Thymus
44	chr3:136088800-136101000	Weak transcription	A549	lung
45	chr3:136092200-136108000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr3:136093200-136117000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:136094000-136101000	Weak transcription	Brain Anterior Caudate	brain
48	chr3:136094600-136115800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:136095600-136100400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:136095600-136101400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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