Variant report

Variant	rs34001665
Chromosome Location	chr7:16655393-16655394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16655192..16657272-chr7:16805854..16808580,2	MCF-7	breast:
2	chr7:16650532..16652095-chr7:16654625..16656401,2	K562	blood:
3	chr7:16647541..16650601-chr7:16652797..16655866,3	K562	blood:
4	chr7:16653579..16656411-chr7:16684734..16687056,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106524	Chromatin interaction
ENSG00000136261	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10239553	1.00[AMR][1000 genomes]
rs706036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv887758	chr7:16632561-16668034	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv887759	chr7:16642995-16686940	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16636400-16682600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:16637400-16668400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:16637800-16661600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:16637800-16664800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:16638000-16656200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:16638000-16658800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:16638000-16660200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:16638000-16670800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:16638200-16656200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:16638200-16659800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:16638400-16661600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:16638400-16670000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:16638400-16670200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:16639000-16656600	Strong transcription	Left Ventricle	heart
15	chr7:16640400-16668000	Weak transcription	HSMMtube	muscle
16	chr7:16640600-16663400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:16640800-16659800	Weak transcription	NHEK	skin
18	chr7:16640800-16677000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:16642000-16674000	Weak transcription	Psoas Muscle	Psoas
20	chr7:16643000-16659800	Weak transcription	Fetal Heart	heart
21	chr7:16643400-16656200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:16643600-16663000	Weak transcription	HUVEC	blood vessel
23	chr7:16643600-16676000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr7:16643600-16681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr7:16643800-16670200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:16644400-16677600	Weak transcription	Brain Substantia Nigra	brain
27	chr7:16644600-16656400	Weak transcription	Colon Smooth Muscle	Colon
28	chr7:16644600-16678000	Weak transcription	Fetal Brain Male	brain
29	chr7:16646000-16656400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:16646200-16656400	Weak transcription	Esophagus	oesophagus
31	chr7:16646600-16683000	Weak transcription	Colonic Mucosa	Colon
32	chr7:16646800-16656200	Weak transcription	Lung	lung
33	chr7:16646800-16656200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr7:16647600-16666400	Strong transcription	Liver	Liver
35	chr7:16648200-16668200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:16648400-16656000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:16649000-16663200	Weak transcription	Brain Hippocampus Middle	brain
38	chr7:16649400-16656200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr7:16649600-16662800	Weak transcription	HMEC	breast
40	chr7:16650000-16656200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:16650000-16659800	Weak transcription	Ovary	ovary
42	chr7:16650200-16659800	Weak transcription	HepG2	liver
43	chr7:16650400-16659800	Weak transcription	Fetal Kidney	kidney
44	chr7:16650600-16658200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:16651200-16659400	Weak transcription	HSMM	muscle
46	chr7:16651600-16658000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr7:16651800-16676600	Weak transcription	Small Intestine	intestine
48	chr7:16651800-16683600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:16652000-16674000	Weak transcription	Stomach Mucosa	stomach
50	chr7:16652200-16657200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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