Variant report

Variant	rs34002696
Chromosome Location	chr9:97653841-97653842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34274440	1.00[AFR][1000 genomes]
rs34381422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35391871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35921285	1.00[AFR][1000 genomes]
rs67034605	1.00[AFR][1000 genomes]
rs72746566	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97638600-97661800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97648000-97657400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:97648400-97656400	Weak transcription	NH-A	brain
5	chr9:97648400-97657400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:97648600-97654600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:97648600-97654600	Weak transcription	Pancreas	Pancrea
8	chr9:97648600-97654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:97648600-97656000	Weak transcription	Liver	Liver
10	chr9:97650400-97654600	Weak transcription	Osteobl	bone
11	chr9:97650400-97655800	Weak transcription	Stomach Mucosa	stomach
12	chr9:97650600-97654200	ZNF genes & repeats	A549	lung
13	chr9:97650600-97656000	Weak transcription	NHLF	lung
14	chr9:97651000-97655400	Weak transcription	Hela-S3	cervix
15	chr9:97651800-97654200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:97652800-97654400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:97653400-97654000	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr9:97653400-97662400	Weak transcription	Fetal Brain Male	brain
19	chr9:97653600-97656200	Weak transcription	HSMM	muscle
20	chr9:97653800-97654200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
21	chr9:97653800-97654800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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