Variant report

Variant	rs34002721
Chromosome Location	chr10:29312612-29312613
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:29300078..29302252-chr10:29312556..29314108,2	MCF-7	breast:
2	chr10:29312390..29314402-chr10:29318624..29321078,2	MCF-7	breast:
3	chr10:28920568..28922967-chr10:29311502..29313031,2	MCF-7	breast:
4	chr10:29311489..29313141-chr10:29391158..29393431,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12260922	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768476	0.91[AFR][1000 genomes]
rs1763367	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184607	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2263012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2487845	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2487846	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2487847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34754736	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35836218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35929094	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60276291	0.91[AFR][1000 genomes]
rs60860356	0.83[EUR][1000 genomes]
rs71489643	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1046678	chr10:29242479-29378871	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv540524	chr10:29242479-29378871	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:29302400-29317200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:29310400-29314200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:29310800-29312800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:29311000-29314600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:29311600-29312800	Enhancers	Fetal Kidney	kidney
6	chr10:29311800-29314400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:29311800-29316000	Weak transcription	Fetal Lung	lung
8	chr10:29312000-29314600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:29312400-29312800	Enhancers	HSMMtube	muscle
10	chr10:29312400-29313600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:29312600-29312800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:29312600-29312800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:29312600-29312800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:29312600-29312800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:29312600-29312800	Enhancers	A549	lung
16	chr10:29312600-29313000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:29312600-29313000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr10:29312600-29313000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:29312600-29313200	Enhancers	Hela-S3	cervix
20	chr10:29312600-29315000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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