Variant report

Variant	rs34002900
Chromosome Location	chr3:134369216-134369217
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv3343656	chr3:134368312-134371210	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134361600-134369600	Weak transcription	Pancreas	Pancrea
2	chr3:134363800-134369400	Weak transcription	Ovary	ovary
3	chr3:134364400-134369400	Weak transcription	HSMMtube	muscle
4	chr3:134365000-134369400	Weak transcription	Right Atrium	heart
5	chr3:134367000-134369800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr3:134368200-134371200	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr3:134368400-134371800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr3:134368600-134369400	Flanking Active TSS	Fetal Heart	heart
9	chr3:134368600-134369600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr3:134368600-134370200	Active TSS	Rectal Smooth Muscle	rectum
11	chr3:134368800-134369400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:134368800-134369600	Flanking Active TSS	Osteobl	bone
13	chr3:134368800-134370200	Active TSS	Brain Angular Gyrus	brain
14	chr3:134368800-134370200	Active TSS	Brain Hippocampus Middle	brain
15	chr3:134368800-134370200	Active TSS	Brain Substantia Nigra	brain
16	chr3:134369000-134369400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:134369000-134369400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:134369000-134369400	Flanking Active TSS	NHDF-Ad	bronchial
19	chr3:134369000-134370000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:134369000-134370400	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr3:134369000-134370600	Active TSS	Colon Smooth Muscle	Colon
22	chr3:134369000-134370600	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr3:134369000-134370800	Active TSS	Brain Anterior Caudate	brain
24	chr3:134369200-134369400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:134369200-134369400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:134369200-134369400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:134369200-134369400	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:134369200-134369400	Enhancers	Primary hematopoietic stem cells	blood
29	chr3:134369200-134369400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:134369200-134369400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
31	chr3:134369200-134369400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:134369200-134369400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:134369200-134369400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:134369200-134369400	Enhancers	Adipose Nuclei	Adipose
35	chr3:134369200-134369400	Active TSS	Colonic Mucosa	Colon
36	chr3:134369200-134369400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
37	chr3:134369200-134369400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr3:134369200-134369400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
39	chr3:134369200-134369400	Bivalent Enhancer	Fetal Stomach	stomach
40	chr3:134369200-134369400	Bivalent/Poised TSS	HMEC	breast
41	chr3:134369200-134369400	Active TSS	HSMM	muscle
42	chr3:134369200-134369400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
43	chr3:134369200-134369600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr3:134369200-134369600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:134369200-134369600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
46	chr3:134369200-134369600	Flanking Active TSS	Right Ventricle	heart
47	chr3:134369200-134369600	Flanking Active TSS	NH-A	brain
48	chr3:134369200-134370000	Active TSS	Muscle Satellite Cultured Cells	--
49	chr3:134369200-134370000	Active TSS	Left Ventricle	heart
50	chr3:134369200-134370200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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