Variant report

Variant	rs34012893
Chromosome Location	chr6:131647834-131647835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34574568	1.00[ASN][1000 genomes]
rs35873220	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs610167	1.00[ASN][1000 genomes]
rs615376	1.00[ASN][1000 genomes]
rs623341	1.00[ASN][1000 genomes]
rs632318	1.00[ASN][1000 genomes]
rs637024	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv886666	chr6:131573433-131666295	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131644200-131648800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:131644200-131662600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:131645200-131649000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
4	chr6:131646000-131649000	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
5	chr6:131646000-131650400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:131646200-131660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:131646400-131649400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:131646400-131649600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:131646400-131653600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:131646400-131655000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:131647800-131648200	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:131647800-131649000	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:131647800-131650400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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