Variant report

Variant	rs34013568
Chromosome Location	chr11:101507671-101507672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11224876	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11224879	0.86[EUR][1000 genomes]
rs11224894	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11224898	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11224901	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224952	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11224955	0.85[EUR][1000 genomes]
rs11224956	0.85[EUR][1000 genomes]
rs11224958	0.85[EUR][1000 genomes]
rs11224961	0.85[EUR][1000 genomes]
rs11224963	0.85[EUR][1000 genomes]
rs11224967	0.85[EUR][1000 genomes]
rs11493972	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11512501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11512686	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146595	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12361061	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12363566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12364156	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12789602	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12790768	0.97[EUR][1000 genomes]
rs12796523	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12797777	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12802694	0.85[EUR][1000 genomes]
rs34159741	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34209047	0.85[EUR][1000 genomes]
rs35456437	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3802829	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3824935	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3922961	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4379797	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66732103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7103450	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7109847	0.97[EUR][1000 genomes]
rs7121108	0.92[EUR][1000 genomes]
rs7126833	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101507000-101509600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:101507000-101509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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