Variant report

Variant	rs340151
Chromosome Location	chr3:111799845-111799846
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs173108	1.00[JPT][hapmap]
rs189302	1.00[JPT][hapmap]
rs191455	1.00[JPT][hapmap]
rs340154	1.00[JPT][hapmap]
rs340161	1.00[JPT][hapmap]
rs60333691	0.97[EUR][1000 genomes]
rs73218018	0.94[EUR][1000 genomes]
rs73218049	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111794800-111804800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:111795200-111803000	Weak transcription	Primary T cells from cord blood	blood
3	chr3:111795200-111804200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111795200-111804800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:111797400-111803400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:111797600-111803000	Weak transcription	Fetal Thymus	thymus
7	chr3:111799600-111804400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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