Variant report

Variant	rs340156
Chromosome Location	chr3:111816661-111816662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111815832..111818403-chr3:112276886..112278586,2	MCF-7	breast:
2	chr3:111815599..111817601-chr3:112708787..112711092,2	MCF-7	breast:
3	chr3:111804265..111807071-chr3:111815537..111817475,2	K562	blood:

Variant related genes	Relation type
ENSG00000163607	Chromatin interaction
ENSG00000114529	Chromatin interaction
ENSG00000272844	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs340170	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111806000-111821600	Weak transcription	Lung	lung
2	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
3	chr3:111812000-111825000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:111812000-111844000	Weak transcription	Colonic Mucosa	Colon
5	chr3:111812000-111845600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:111812200-111820200	Weak transcription	Gastric	stomach
7	chr3:111812200-111820200	Weak transcription	Thymus	Thymus
8	chr3:111812200-111828000	Weak transcription	Left Ventricle	heart
9	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
10	chr3:111812400-111820400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:111812400-111820600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:111812400-111820800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:111812400-111821400	Weak transcription	Primary B cells from cord blood	blood
14	chr3:111812400-111822000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:111812400-111824800	Weak transcription	Primary T cells from cord blood	blood
16	chr3:111812400-111832000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:111812400-111835800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:111812600-111821800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:111812600-111828000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:111812600-111840200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:111814000-111817400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr3:111814200-111817200	Enhancers	Hela-S3	cervix
23	chr3:111814200-111820200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:111814200-111820600	Weak transcription	Pancreas	Pancrea
25	chr3:111814400-111817200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr3:111814400-111820400	Weak transcription	Fetal Thymus	thymus
27	chr3:111814400-111836000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr3:111814800-111816800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:111814800-111817200	Enhancers	Fetal Heart	heart
30	chr3:111815000-111817000	Enhancers	Fetal Intestine Small	intestine
31	chr3:111815000-111817200	Enhancers	Fetal Intestine Large	intestine
32	chr3:111815000-111817400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:111815000-111821800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:111815200-111820200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:111815200-111820200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:111815200-111820400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr3:111815200-111820800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr3:111815400-111817000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:111815400-111817200	Enhancers	HMEC	breast
40	chr3:111815400-111817400	Enhancers	NH-A	brain
41	chr3:111815600-111817200	Enhancers	HUVEC	blood vessel
42	chr3:111815600-111817400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:111815800-111816800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:111815800-111817000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:111815800-111817600	Enhancers	NHEK	skin
46	chr3:111815800-111820200	Weak transcription	Placenta	Placenta
47	chr3:111815800-111823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:111816000-111816800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr3:111816000-111816800	Enhancers	NHLF	lung
50	chr3:111816000-111817000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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