Variant report

Variant	rs34015947
Chromosome Location	chr7:111629111-111629112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:111623241..111625570-chr7:111627494..111630034,2	K562	blood:
2	chr7:111625649..111629487-chr7:112089859..112091650,3	MCF-7	breast:
3	chr7:111622597..111625048-chr7:111627500..111629873,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10224145	1.00[AMR][1000 genomes]
rs10259617	1.00[AMR][1000 genomes]
rs10273794	1.00[AMR][1000 genomes]
rs10274195	1.00[AMR][1000 genomes]
rs73422427	1.00[AMR][1000 genomes]
rs73428833	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1028740	chr7:111227747-111679401	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1015267	chr7:111303294-111714771	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539087	chr7:111303294-111714771	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv539088	chr7:111333899-111722341	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv533924	chr7:111529515-111784369	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv1023261	chr7:111593889-111780337	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
13	nsv1016663	chr7:111622107-111813223	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111583600-111630800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:111584200-111631800	Weak transcription	A549	lung
3	chr7:111585200-111630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:111593600-111638200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:111600000-111645800	Weak transcription	Aorta	Aorta
6	chr7:111600000-111651000	Weak transcription	Psoas Muscle	Psoas
7	chr7:111603400-111630600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:111609600-111633800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:111610200-111630800	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:111610600-111631600	Weak transcription	Pancreas	Pancrea
11	chr7:111611800-111634400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:111611800-111650600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:111612000-111634400	Weak transcription	Esophagus	oesophagus
14	chr7:111612000-111646000	Weak transcription	Fetal Brain Female	brain
15	chr7:111612000-111650400	Weak transcription	Right Ventricle	heart
16	chr7:111615000-111632800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:111615600-111630800	Weak transcription	Fetal Kidney	kidney
18	chr7:111617000-111634200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:111618200-111634200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr7:111619800-111641200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:111620400-111630000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:111620400-111643600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:111621400-111632400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:111621800-111629800	Strong transcription	Liver	Liver
25	chr7:111622400-111632200	Weak transcription	HSMMtube	muscle
26	chr7:111623000-111633000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:111623400-111629200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr7:111624000-111629600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:111624200-111630000	Weak transcription	Fetal Intestine Small	intestine
30	chr7:111624400-111645200	Weak transcription	Brain Germinal Matrix	brain
31	chr7:111624600-111629800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:111624600-111636200	Weak transcription	Adipose Nuclei	Adipose
33	chr7:111624800-111632600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:111625400-111634400	Weak transcription	Ovary	ovary
35	chr7:111625400-111638200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr7:111625400-111638400	Weak transcription	Fetal Stomach	stomach
37	chr7:111625400-111649000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:111626000-111629400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr7:111626200-111633000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:111626200-111637600	Weak transcription	Brain Angular Gyrus	brain
41	chr7:111626800-111632400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr7:111627400-111629200	Strong transcription	Brain Substantia Nigra	brain
43	chr7:111627400-111650600	Weak transcription	Fetal Brain Male	brain
44	chr7:111627800-111629200	Strong transcription	Brain Cingulate Gyrus	brain
45	chr7:111627800-111630000	Strong transcription	Brain Hippocampus Middle	brain
46	chr7:111627800-111632200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:111627800-111632200	Weak transcription	HSMM	muscle
48	chr7:111627800-111632400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:111627800-111632600	Weak transcription	NH-A	brain
50	chr7:111627800-111637800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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