Variant report

Variant	rs34016280
Chromosome Location	chr4:95682861-95682862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12508481	0.93[ASN][1000 genomes]
rs34328418	0.87[ASN][1000 genomes]
rs4348103	0.87[ASN][1000 genomes]
rs4699361	0.84[ASN][1000 genomes]
rs56214010	0.87[ASN][1000 genomes]
rs62316512	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95680600-95683200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:95680600-95683200	Enhancers	Dnd41	blood
3	chr4:95680600-95684200	Weak transcription	NHEK	skin
4	chr4:95680600-95687000	Weak transcription	HMEC	breast
5	chr4:95681800-95684000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:95681800-95685400	Flanking Active TSS	A549	lung
7	chr4:95682000-95683000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:95682400-95685400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:95682600-95684000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:95682800-95683000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:95682800-95683000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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