Variant report

Variant	rs34020756
Chromosome Location	chr19:35925401-35925402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35904488..35907607-chr19:35923492..35926171,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KRTDAP-1	chr19:35925107-35925565	NONHSAT065841
2	lnc-KRTDAP-1	chr19:35925107-35925544	ENSG00000232680.2

Variant related genes	Relation type
ENSG00000264400	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12610627	0.98[EUR][1000 genomes]
rs12979319	0.88[EUR][1000 genomes]
rs12981573	0.92[EUR][1000 genomes]
rs34759383	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35776741	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35779459	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35863509	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
5	nsv833811	chr19:35850257-36029535	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35912600-35938000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:35920600-35930000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:35921400-35926400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr19:35923000-35926400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:35923000-35926400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr19:35923200-35926400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:35923200-35926400	Weak transcription	GM12878-XiMat	blood
8	chr19:35923800-35925600	Bivalent Enhancer	Placenta	Placenta
9	chr19:35923800-35930000	Enhancers	Fetal Muscle Leg	muscle
10	chr19:35924200-35925600	Enhancers	Spleen	Spleen
11	chr19:35924200-35926200	Enhancers	Primary B cells from cord blood	blood
12	chr19:35924400-35925600	Enhancers	Esophagus	oesophagus
13	chr19:35924400-35927200	Enhancers	Fetal Lung	lung
14	chr19:35924400-35928600	Enhancers	Fetal Kidney	kidney
15	chr19:35924400-35929600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr19:35924600-35925600	Enhancers	Brain Angular Gyrus	brain
17	chr19:35924600-35925600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr19:35924600-35925600	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr19:35924600-35925600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr19:35924600-35925800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr19:35924600-35927400	Enhancers	Fetal Muscle Trunk	muscle
22	chr19:35924800-35925600	Enhancers	Left Ventricle	heart
23	chr19:35924800-35925600	Enhancers	Right Ventricle	heart
24	chr19:35924800-35925600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
25	chr19:35924800-35925800	Enhancers	Liver	Liver
26	chr19:35924800-35926000	Weak transcription	Small Intestine	intestine
27	chr19:35924800-35927600	Enhancers	Fetal Heart	heart
28	chr19:35925000-35925600	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr19:35925000-35925600	Flanking Active TSS	Colonic Mucosa	Colon
30	chr19:35925000-35925600	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr19:35925000-35925600	Flanking Bivalent TSS/Enh	HepG2	liver
32	chr19:35925000-35925800	Enhancers	Lung	lung
33	chr19:35925000-35925800	Enhancers	Ovary	ovary
34	chr19:35925000-35926000	Enhancers	Right Atrium	heart
35	chr19:35925200-35925600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr19:35925200-35925600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr19:35925200-35925600	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr19:35925200-35925600	Flanking Active TSS	Brain Anterior Caudate	brain
39	chr19:35925200-35925600	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr19:35925200-35925600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr19:35925200-35925600	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr19:35925200-35925600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr19:35925200-35925600	Flanking Active TSS	Fetal Stomach	stomach
44	chr19:35925200-35925600	Flanking Active TSS	Pancreas	Pancrea
45	chr19:35925200-35925600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr19:35925200-35926000	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr19:35925200-35927600	Enhancers	Stomach Mucosa	stomach
48	chr19:35925400-35925600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr19:35925400-35925600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:35925400-35925600	Flanking Active TSS	Fetal Intestine Small	intestine

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