Variant report

Variant	rs34026456
Chromosome Location	chr14:103543079-103543080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:103542164..103543777-chr14:103606281..103608399,2	MCF-7	breast:
2	chr14:103522023..103526677-chr14:103539052..103543430,10	MCF-7	breast:
3	chr14:103542907..103546680-chr14:103552352..103554625,3	K562	blood:
4	chr14:103537897..103543787-chr14:103799072..103802497,9	MCF-7	breast:
5	chr14:103540581..103543429-chr14:103599360..103601090,2	K562	blood:
6	chr14:103541417..103543680-chr14:103798244..103801088,3	MCF-7	breast:
7	chr14:103531098..103534720-chr14:103539867..103543696,4	MCF-7	breast:
8	chr14:103541299..103543101-chr14:103573474..103576327,2	MCF-7	breast:
9	chr14:103540748..103543589-chr14:103756933..103760919,4	MCF-7	breast:
10	chr14:103532439..103535007-chr14:103541881..103544284,2	MCF-7	breast:
11	chr14:103521448..103525691-chr14:103536309..103543666,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198752	Chromatin interaction
ENSG00000259775	Chromatin interaction
ENSG00000205436	Chromatin interaction
ENSG00000100664	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55698123	1.00[AFR][1000 genomes]
rs55804624	1.00[AFR][1000 genomes]
rs56234995	1.00[AFR][1000 genomes]
rs56389033	1.00[AFR][1000 genomes]
rs56411453	1.00[AFR][1000 genomes]
rs7725724	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042714	chr14:103085298-103860730	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
3	nsv1042471	chr14:103159790-103760619	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv542197	chr14:103159790-103760619	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1831121	chr14:103348177-103566113	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv832882	chr14:103436946-103609181	Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
8	nsv902264	chr14:103520762-103613192	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	esv1813975	chr14:103525424-103609180	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
11	esv1818322	chr14:103532219-103606856	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	esv1797163	chr14:103541542-103602729	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103542000-103544200	Weak transcription	Gastric	stomach
2	chr14:103542400-103544400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:103542400-103544600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:103542600-103544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:103542600-103544400	Weak transcription	Liver	Liver
6	chr14:103542600-103544400	Weak transcription	A549	lung
7	chr14:103542600-103544400	Weak transcription	HepG2	liver
8	chr14:103542600-103544800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:103542600-103544800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:103542600-103544800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:103542600-103544800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:103542600-103545000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:103542600-103545000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:103542600-103545000	Enhancers	Placenta	Placenta
15	chr14:103542600-103547800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:103542600-103550600	Weak transcription	Right Atrium	heart
17	chr14:103542800-103544200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr14:103542800-103544400	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:103542800-103544400	Weak transcription	Hela-S3	cervix
20	chr14:103542800-103544800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:103542800-103544800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:103542800-103544800	Weak transcription	K562	blood
23	chr14:103543000-103544600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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