Variant report

Variant	rs34029477
Chromosome Location	chr5:154379147-154379148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11922062	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923078	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13099388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34291190	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34630556	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35236254	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35236988	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6765307	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6810157	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv968117	chr5:154371654-154381973	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154375600-154380400	Weak transcription	HepG2	liver
2	chr5:154377800-154379200	Weak transcription	HUVEC	blood vessel
3	chr5:154377800-154381200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:154377800-154381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:154377800-154381800	Weak transcription	HMEC	breast
6	chr5:154377800-154381800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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