Variant report

Variant	rs34029528
Chromosome Location	chr3:105088435-105088436
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:64340243..64342606-chr3:105087627..105090133,2	MCF-7	breast:
2	chr3:104282786..104283565-chr3:105088219..105088788,2	MCF-7	breast:
3	chr3:105088359..105089332-chr3:105237182..105238145,2	MCF-7	breast:
4	chr3:105087236..105090040-chr3:105234697..105237400,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11710166	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11710857	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11713535	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11714275	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11714277	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715283	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11716035	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718405	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718457	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719817	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898655	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1955135	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2200473	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2399049	0.85[ASN][1000 genomes]
rs2895300	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772542	0.85[ASN][1000 genomes]
rs3772544	0.85[ASN][1000 genomes]
rs3772547	0.85[ASN][1000 genomes]
rs481177	0.85[ASN][1000 genomes]
rs526297	0.85[ASN][1000 genomes]
rs57986655	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59322590	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs598425	0.85[ASN][1000 genomes]
rs61522255	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6771935	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771987	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786815	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794273	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73175407	0.85[ASN][1000 genomes]
rs73175433	0.85[ASN][1000 genomes]
rs73175435	0.85[ASN][1000 genomes]
rs73175442	0.85[ASN][1000 genomes]
rs73175449	0.85[ASN][1000 genomes]
rs73175451	0.85[ASN][1000 genomes]
rs73175463	0.85[ASN][1000 genomes]
rs73177459	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73177465	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177470	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177478	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177489	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177494	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179378	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179384	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181374	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181376	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181380	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181387	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181395	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181396	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181397	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181401	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183103	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183108	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183112	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183114	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183115	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183185	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183186	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183187	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183188	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183198	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73185106	0.81[ASN][1000 genomes]
rs73185114	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73185115	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73189021	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73189028	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73189034	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73189060	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73192717	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73192730	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73192733	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73192737	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73192751	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73192754	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73192770	0.85[ASN][1000 genomes]
rs7647426	0.90[ASN][1000 genomes]
rs7647531	0.90[ASN][1000 genomes]
rs978436	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105083800-105088800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr3:105083800-105088800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr3:105084000-105088800	Active TSS	Brain Substantia Nigra	brain
4	chr3:105084000-105089000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:105084000-105089000	Active TSS	A549	lung
6	chr3:105084000-105089600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:105084200-105089000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:105084200-105089000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:105084200-105089000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:105084200-105089200	Active TSS	NHDF-Ad	bronchial
11	chr3:105084200-105089600	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr3:105084200-105089600	Active TSS	NHLF	lung
13	chr3:105084200-105090400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr3:105084400-105088800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:105084400-105088800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:105084400-105088800	Active TSS	Brain Cingulate Gyrus	brain
17	chr3:105084400-105088800	Active TSS	Gastric	stomach
18	chr3:105084400-105089000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:105084400-105089000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:105084400-105089000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr3:105084400-105089000	Active TSS	Aorta	Aorta
22	chr3:105084400-105089000	Active TSS	Brain Angular Gyrus	brain
23	chr3:105084400-105089000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:105084400-105089000	Active TSS	Ovary	ovary
25	chr3:105084400-105089400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:105084400-105089400	Active TSS	GM12878-XiMat	blood
27	chr3:105084400-105089600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:105084600-105088600	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr3:105084600-105088600	Active TSS	Small Intestine	intestine
30	chr3:105084600-105088800	Active TSS	Muscle Satellite Cultured Cells	--
31	chr3:105084600-105088800	Active TSS	Esophagus	oesophagus
32	chr3:105084600-105088800	Active TSS	Fetal Heart	heart
33	chr3:105084600-105089000	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr3:105084600-105089000	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr3:105084600-105089000	Active TSS	Rectal Smooth Muscle	rectum
36	chr3:105084600-105089000	Active TSS	Osteobl	bone
37	chr3:105084600-105089200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:105084600-105089200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:105084600-105089200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:105084600-105089200	Active TSS	HSMM	muscle
41	chr3:105084600-105089200	Active TSS	NH-A	brain
42	chr3:105084600-105089400	Active TSS	Brain Anterior Caudate	brain
43	chr3:105084600-105089800	Active TSS	Fetal Kidney	kidney
44	chr3:105084800-105088800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:105084800-105088800	Active TSS	Placenta Amnion	Placenta Amnion
46	chr3:105084800-105088800	Active TSS	HSMMtube	muscle
47	chr3:105084800-105089000	Active TSS	Stomach Mucosa	stomach
48	chr3:105084800-105089200	Active TSS	Brain Hippocampus Middle	brain
49	chr3:105084800-105089200	Active TSS	NHEK	skin
50	chr3:105084800-105089400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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