Variant report

Variant	rs34032604
Chromosome Location	chr11:64846968-64846969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64843090-64847127	K562	blood:	n/a	n/a
2	POLR2A	chr11:64845713-64847086	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:64845576-64847170	GM12878	blood:	n/a	n/a
4	POLR2A	chr11:64845587-64847104	GM12892	blood:	n/a	n/a
5	STAT5A	chr11:64846877-64847260	GM12878	blood:	n/a	n/a
6	POLR2A	chr11:64845573-64847047	GM12892	blood:	n/a	n/a
7	POLR2A	chr11:64844916-64847137	GM12892	blood:	n/a	n/a
8	PML	chr11:64845510-64847024	GM12878	blood:	n/a	n/a
9	POLR2A	chr11:64844960-64847327	K562	blood:	n/a	n/a
10	POLR2A	chr11:64844998-64847204	PANC-1	pancreas:	n/a	n/a
11	ELF1	chr11:64846725-64847222	GM12878	blood:	n/a	n/a
12	POLR2A	chr11:64846818-64847013	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr11:64846941-64846970	GM12878	blood:	n/a	n/a
14	RUNX3	chr11:64846612-64847020	GM12878	blood:	n/a	n/a
15	EBF1	chr11:64846627-64847119	GM12878	blood:	n/a	chr11:64846921-64846932
16	MTA3	chr11:64845385-64847001	GM12878	blood:	n/a	n/a
17	POLR2A	chr11:64846694-64847125	K562	blood:	n/a	n/a
18	POLR2A	chr11:64846819-64847094	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr11:64846900-64847050	GM12865	blood:	n/a	n/a
20	POLR2A	chr11:64846838-64847146	GM12878	blood:	n/a	n/a
21	POLR2A	chr11:64846548-64847104	GM12878	blood:	n/a	n/a
22	POLR2A	chr11:64844583-64847304	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64779777..64783339-chr11:64843637..64848045,5	K562	blood:
2	chr11:64544278..64546281-chr11:64845334..64847627,2	MCF-7	breast:
3	chr11:64844843..64847340-chr11:64878794..64881424,3	MCF-7	breast:
4	chr11:64845914..64848765-chr11:64874979..64877656,2	MCF-7	breast:
5	chr11:64648332..64650222-chr11:64845042..64847763,3	MCF-7	breast:
6	chr11:64807534..64810713-chr11:64846257..64849828,3	MCF-7	breast:
7	chr11:64781206..64783031-chr11:64845885..64848053,2	MCF-7	breast:
8	chr11:64780038..64784183-chr11:64845056..64847666,6	K562	blood:
9	chr11:64577011..64578912-chr11:64845908..64848474,2	K562	blood:

No data

Variant related genes	Relation type
CDCA5	TF binding region
ZFPL1	TF binding region
ENSG00000213465	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000230835	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000168061	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000149823	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17883382	1.00[AMR][1000 genomes]
rs17887152	1.00[AMR][1000 genomes]
rs34713603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34997862	1.00[AMR][1000 genomes]
rs4149845	1.00[AMR][1000 genomes]
rs41541317	1.00[AMR][1000 genomes]
rs71541944	1.00[AMR][1000 genomes]
rs9333580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64822400-64850800	Weak transcription	Esophagus	oesophagus
2	chr11:64834200-64850600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:64834800-64847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:64837400-64848000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:64837800-64850800	Weak transcription	Pancreas	Pancrea
6	chr11:64839800-64847800	Weak transcription	HSMM	muscle
7	chr11:64840200-64850800	Weak transcription	Spleen	Spleen
8	chr11:64841400-64848400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:64842200-64847800	Weak transcription	HUVEC	blood vessel
10	chr11:64842800-64850200	Weak transcription	Fetal Lung	lung
11	chr11:64843000-64849800	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr11:64843000-64849800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:64843000-64849800	Strong transcription	Thymus	Thymus
14	chr11:64843000-64850000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:64843000-64850200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:64843000-64850200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:64843200-64847200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:64843200-64848000	Strong transcription	NHEK	skin
19	chr11:64843200-64849200	Strong transcription	Fetal Muscle Leg	muscle
20	chr11:64843200-64849400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:64843200-64849600	Strong transcription	Fetal Stomach	stomach
22	chr11:64843200-64849800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:64843200-64849800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:64843200-64850200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:64843400-64849800	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr11:64843400-64849800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr11:64843400-64850000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:64843400-64850200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:64843600-64850600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:64844000-64848600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:64844000-64849200	Strong transcription	NHLF	lung
32	chr11:64844000-64849600	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:64844000-64850200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:64844600-64848000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:64844800-64850200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:64845000-64847400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
37	chr11:64845000-64848600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:64845000-64848800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:64845000-64849000	Genic enhancers	Dnd41	blood
40	chr11:64845000-64849600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:64845200-64850800	Weak transcription	Colonic Mucosa	Colon
42	chr11:64845400-64850600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:64845600-64847000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:64845600-64848400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:64845600-64848600	Strong transcription	NH-A	brain
46	chr11:64845600-64850200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:64845800-64847800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:64845800-64849200	Strong transcription	NHDF-Ad	bronchial
49	chr11:64846000-64847000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:64846000-64849200	Strong transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links