Variant report

Variant	rs34033747
Chromosome Location	chr11:8853774-8853775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10840127	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840129	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042070	0.84[ASN][1000 genomes]
rs11042072	0.84[ASN][1000 genomes]
rs11042099	0.87[AMR][1000 genomes]
rs16906056	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17337866	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2568056	0.84[AMR][1000 genomes]
rs2653591	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653618	0.83[AMR][1000 genomes]
rs2742549	0.86[AMR][1000 genomes]
rs2742553	0.86[AMR][1000 genomes]
rs34023999	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34152382	0.86[AMR][1000 genomes]
rs34275210	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34371023	0.86[AMR][1000 genomes]
rs34417491	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34418236	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34581555	0.82[AMR][1000 genomes]
rs34769330	0.82[AMR][1000 genomes]
rs35503692	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35563381	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35580466	0.86[AMR][1000 genomes]
rs35909878	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36094920	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs36100955	0.84[AMR][1000 genomes]
rs36180552	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3850934	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3915868	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4910068	0.86[AMR][1000 genomes]
rs7117900	0.86[AMR][1000 genomes]
rs7127197	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7950491	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8833200-8859800	Weak transcription	Aorta	Aorta
2	chr11:8845200-8854200	Weak transcription	Psoas Muscle	Psoas
3	chr11:8845800-8860000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:8846600-8854400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:8849000-8853800	Genic enhancers	Fetal Muscle Leg	muscle
6	chr11:8849000-8854000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:8849000-8854000	Strong transcription	Fetal Stomach	stomach
8	chr11:8849000-8854000	Weak transcription	Stomach Mucosa	stomach
9	chr11:8849000-8854000	Weak transcription	Hela-S3	cervix
10	chr11:8849000-8854200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:8849000-8854200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:8849000-8854200	Weak transcription	A549	lung
13	chr11:8849200-8854000	Weak transcription	Fetal Heart	heart
14	chr11:8849400-8854000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:8849400-8854000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:8849400-8854200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:8849600-8854000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:8849800-8854200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:8849800-8854200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:8850400-8854600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:8850600-8854000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:8850600-8854200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:8850800-8854000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:8850800-8854000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:8850800-8854000	Weak transcription	Colonic Mucosa	Colon
26	chr11:8850800-8854000	Weak transcription	Pancreas	Pancrea
27	chr11:8850800-8854000	Weak transcription	Right Atrium	heart
28	chr11:8850800-8854000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:8850800-8854200	Weak transcription	Gastric	stomach
30	chr11:8850800-8854200	Weak transcription	Lung	lung
31	chr11:8850800-8854200	Weak transcription	Ovary	ovary
32	chr11:8850800-8854400	Weak transcription	Adipose Nuclei	Adipose
33	chr11:8850800-8854400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:8850800-8854600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:8850800-8854600	Weak transcription	Fetal Kidney	kidney
36	chr11:8851000-8854000	Weak transcription	Osteobl	bone
37	chr11:8851000-8859200	Weak transcription	Fetal Lung	lung
38	chr11:8851000-8861400	Weak transcription	Brain Substantia Nigra	brain
39	chr11:8851200-8854200	Weak transcription	Fetal Intestine Small	intestine
40	chr11:8851600-8854400	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:8851600-8856200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:8851800-8862400	Enhancers	Placenta	Placenta
43	chr11:8852000-8859200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr11:8852200-8853800	Genic enhancers	Fetal Muscle Trunk	muscle
45	chr11:8852400-8854000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:8852600-8855400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:8852600-8856200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:8852600-8856400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:8852800-8853800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:8852800-8853800	Weak transcription	Fetal Thymus	thymus

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