Variant report
Variant | rs340350 |
---|---|
Chromosome Location | chr2:179934792-179934793 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10084229 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs10164707 | 0.90[JPT][hapmap] |
rs10164814 | 0.88[JPT][hapmap] |
rs10181464 | 0.90[JPT][hapmap] |
rs10186305 | 0.84[ASN][1000 genomes] |
rs10188759 | 0.90[JPT][hapmap] |
rs10208593 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs10439300 | 1.00[JPT][hapmap] |
rs10803924 | 1.00[JPT][hapmap] |
rs10930852 | 0.87[ASN][1000 genomes] |
rs10930855 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs10930856 | 1.00[CHB][hapmap] |
rs10930857 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs12621115 | 0.90[JPT][hapmap] |
rs12693175 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs12693179 | 0.90[JPT][hapmap] |
rs12987285 | 0.90[JPT][hapmap] |
rs12997079 | 1.00[CHB][hapmap] |
rs13022867 | 1.00[CHB][hapmap] |
rs13029576 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
rs13382185 | 0.90[JPT][hapmap] |
rs13396334 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs13404037 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs1354385 | 0.90[ASN][1000 genomes] |
rs173110 | 0.97[ASN][1000 genomes] |
rs17363260 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs17363267 | 1.00[CHB][hapmap] |
rs2289993 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs2289994 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs2592564 | 0.95[ASN][1000 genomes] |
rs2655158 | 0.95[ASN][1000 genomes] |
rs340320 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
rs340321 | 0.92[ASN][1000 genomes] |
rs340326 | 0.83[ASN][1000 genomes] |
rs340328 | 0.90[ASN][1000 genomes] |
rs340332 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs340334 | 1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs340338 | 0.95[ASN][1000 genomes] |
rs340349 | 1.00[ASN][1000 genomes] |
rs4893863 | 0.95[ASN][1000 genomes] |
rs6433746 | 0.95[ASN][1000 genomes] |
rs7558039 | 0.95[ASN][1000 genomes] |
rs7598203 | 0.95[ASN][1000 genomes] |
rs7601366 | 0.89[JPT][hapmap] |
rs924801 | 0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949133 | chr2:179711376-180124327 | Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
2 | nsv875457 | chr2:179775893-179966804 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv875458 | chr2:179780624-179966804 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv875464 | chr2:179843612-179939493 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv875465 | chr2:179843612-179966804 | Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv508184 | chr2:179896384-179965419 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1004693 | chr2:179933683-180265288 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
8 | nsv1003301 | chr2:179934190-179963263 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:179932000-179937000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr2:179933800-179934800 | Enhancers | Left Ventricle | heart |