Variant report

Variant	rs34039100
Chromosome Location	chr14:31561168-31561169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31560677..31562570-chr14:31676367..31678579,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11620816	0.86[EUR][1000 genomes]
rs11622403	0.83[EUR][1000 genomes]
rs11625570	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11625798	0.87[EUR][1000 genomes]
rs11626343	0.84[EUR][1000 genomes]
rs11845860	0.86[EUR][1000 genomes]
rs11848094	0.87[EUR][1000 genomes]
rs11848563	0.86[EUR][1000 genomes]
rs17097688	0.82[EUR][1000 genomes]
rs17097735	0.90[EUR][1000 genomes]
rs17097741	0.89[EUR][1000 genomes]
rs17097743	0.90[EUR][1000 genomes]
rs34684806	0.87[EUR][1000 genomes]
rs34745649	0.84[EUR][1000 genomes]
rs3954287	0.87[EUR][1000 genomes]
rs45610935	0.82[EUR][1000 genomes]
rs55907561	0.82[EUR][1000 genomes]
rs56168081	0.89[EUR][1000 genomes]
rs56346233	0.89[EUR][1000 genomes]
rs57000706	0.83[EUR][1000 genomes]
rs57893693	0.84[EUR][1000 genomes]
rs58071351	0.89[EUR][1000 genomes]
rs58204331	0.90[EUR][1000 genomes]
rs58771204	0.93[EUR][1000 genomes]
rs59458716	0.84[EUR][1000 genomes]
rs59933112	0.83[EUR][1000 genomes]
rs60350855	0.83[EUR][1000 genomes]
rs60928004	0.89[EUR][1000 genomes]
rs61592116	0.83[EUR][1000 genomes]
rs66528205	0.87[EUR][1000 genomes]
rs67960414	0.89[EUR][1000 genomes]
rs72670334	0.85[EUR][1000 genomes]
rs72670351	0.89[EUR][1000 genomes]
rs72670364	0.89[EUR][1000 genomes]
rs72670371	0.84[EUR][1000 genomes]
rs72670374	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72670375	0.84[EUR][1000 genomes]
rs72670377	0.84[EUR][1000 genomes]
rs72670385	0.84[EUR][1000 genomes]
rs72670390	0.84[EUR][1000 genomes]
rs72670391	0.84[EUR][1000 genomes]
rs72670396	0.84[EUR][1000 genomes]
rs72670398	0.82[EUR][1000 genomes]
rs72670399	0.84[EUR][1000 genomes]
rs9888564	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035937	chr14:31447842-31579660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv542018	chr14:31447842-31579660	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1048736	chr14:31447842-31624912	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1049063	chr14:31473521-31622741	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832763	chr14:31501597-31680021	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv1043033	chr14:31538984-31686696	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31497000-31568600	Weak transcription	Fetal Kidney	kidney
2	chr14:31528600-31567200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:31529800-31566200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:31530000-31567000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:31530000-31567200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:31534200-31566400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:31534400-31566200	Weak transcription	Fetal Thymus	thymus
8	chr14:31534600-31572000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:31534800-31569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:31536400-31566000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:31537400-31569200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr14:31537800-31569800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:31538000-31567200	Weak transcription	GM12878-XiMat	blood
14	chr14:31539000-31567200	Weak transcription	Thymus	Thymus
15	chr14:31540200-31565600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:31540600-31567000	Weak transcription	Dnd41	blood
17	chr14:31541800-31567200	Weak transcription	Fetal Brain Male	brain
18	chr14:31544600-31566200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:31544600-31566200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:31544800-31566600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:31546800-31567400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:31547000-31569800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr14:31548600-31569600	Weak transcription	Brain Germinal Matrix	brain
24	chr14:31548800-31571800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:31550000-31565600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:31550000-31567000	Weak transcription	Esophagus	oesophagus
27	chr14:31550200-31566000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:31550400-31569800	Weak transcription	Aorta	Aorta
29	chr14:31550600-31566600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:31550600-31568600	Weak transcription	K562	blood
31	chr14:31553600-31567200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:31554200-31566400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr14:31554600-31565600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr14:31554600-31565600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:31554600-31566000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:31554600-31566200	Weak transcription	Lung	lung
37	chr14:31554600-31567200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:31554800-31566400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr14:31555000-31566600	Weak transcription	Fetal Brain Female	brain
40	chr14:31555200-31566200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:31555200-31566600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr14:31555400-31565600	Weak transcription	Primary B cells from cord blood	blood
43	chr14:31555400-31565600	Weak transcription	Ovary	ovary
44	chr14:31555400-31566600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr14:31556400-31565600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:31556600-31566000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr14:31556800-31567000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:31557400-31565800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:31558400-31565200	Weak transcription	Fetal Stomach	stomach
50	chr14:31558600-31569400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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