Variant report

Variant	rs34045860
Chromosome Location	chr5:34749622-34749623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:34742870..34745865-chr5:34747753..34750237,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34852912	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830260	chr5:34544725-34764404	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:34718000-34757200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:34732800-34772000	Weak transcription	NHEK	skin
3	chr5:34736000-34756400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:34736200-34752000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:34736200-34757600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:34736800-34758800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:34737000-34751600	Weak transcription	HepG2	liver
8	chr5:34737000-34751800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:34737200-34751600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:34737400-34751600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:34737400-34752000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:34737400-34757400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:34738800-34756600	Weak transcription	Pancreas	Pancrea
14	chr5:34741400-34756000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:34741600-34757600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:34741800-34750200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:34742000-34756600	Weak transcription	Ovary	ovary
18	chr5:34743200-34756000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:34743200-34761200	Weak transcription	Spleen	Spleen
20	chr5:34743400-34754600	Weak transcription	Lung	lung
21	chr5:34743600-34755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:34744200-34757400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:34744200-34769800	Weak transcription	HMEC	breast
24	chr5:34744400-34757200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:34744800-34756000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:34745800-34751600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:34745800-34752000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr5:34746000-34751600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:34746000-34751600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr5:34746000-34757000	Weak transcription	Aorta	Aorta
31	chr5:34747600-34750800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:34748200-34751000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:34748200-34755400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr5:34748200-34758800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr5:34748400-34750600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr5:34748400-34759600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr5:34748400-34767000	Weak transcription	Fetal Heart	heart
38	chr5:34748600-34750800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:34748600-34757600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:34748800-34756800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:34749000-34749800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:34749000-34750400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:34749000-34750400	Enhancers	NHDF-Ad	bronchial
44	chr5:34749000-34750400	Genic enhancers	Osteobl	bone
45	chr5:34749200-34750200	Enhancers	Placenta Amnion	Placenta Amnion
46	chr5:34749200-34750400	Genic enhancers	Muscle Satellite Cultured Cells	--
47	chr5:34749200-34750400	Enhancers	NH-A	brain
48	chr5:34749200-34750800	Enhancers	Fetal Brain Male	brain
49	chr5:34749200-34750800	Enhancers	Fetal Lung	lung
50	chr5:34749200-34752600	Strong transcription	HSMM	muscle

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