Variant report

Variant	rs34048155
Chromosome Location	chr2:210230933-210230934
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210229068..210231553-chr2:210286717..210289025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078018	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10497928	0.83[AMR][1000 genomes]
rs10497930	0.87[EUR][1000 genomes]
rs17235072	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17674661	0.83[AMR][1000 genomes]
rs17675086	0.80[AMR][1000 genomes]
rs17726336	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4435391	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56389925	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72989919	0.83[AMR][1000 genomes]
rs72989935	0.83[AMR][1000 genomes]
rs72990000	0.83[AMR][1000 genomes]
rs72991804	0.83[AMR][1000 genomes]
rs72991807	0.83[AMR][1000 genomes]
rs72991868	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72991898	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72993710	0.87[EUR][1000 genomes]
rs72993758	0.81[EUR][1000 genomes]
rs73006162	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7565855	0.83[AMR][1000 genomes]
rs7587613	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7592860	0.83[AMR][1000 genomes]
rs7606091	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875764	chr2:210195717-210240990	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1014900	chr2:210205050-210235562	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1006636	chr2:210207332-210235562	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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