Variant report

Variant	rs34053410
Chromosome Location	chr5:118785910-118785911
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1143650	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2546206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2546207	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2546208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2546209	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2546212	1.00[AMR][1000 genomes]
rs2560719	1.00[AMR][1000 genomes]
rs2560720	1.00[AMR][1000 genomes]
rs2560721	1.00[AMR][1000 genomes]
rs2560722	1.00[AMR][1000 genomes]
rs2560724	1.00[AMR][1000 genomes]
rs2636960	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2636965	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2636967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2636970	1.00[AMR][1000 genomes]
rs2652698	1.00[AMR][1000 genomes]
rs2678068	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2678069	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2678072	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2678073	1.00[AMR][1000 genomes]
rs2678075	1.00[AMR][1000 genomes]
rs2678077	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2678082	1.00[AMR][1000 genomes]
rs2678083	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2678093	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35121430	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118775400-118787600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:118781600-118788000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:118782400-118787400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:118785400-118786000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:118785400-118787800	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:118785600-118788000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:118785800-118786000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
8	chr5:118785800-118786200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:118785800-118787200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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