Variant report

Variant	rs34059468
Chromosome Location	chr1:78627659-78627660
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11071236	0.81[ASN][1000 genomes]
rs11852462	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11856520	0.83[ASN][1000 genomes]
rs12102147	0.80[EUR][1000 genomes]
rs12898638	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12898981	0.82[ASN][1000 genomes]
rs12900146	0.81[ASN][1000 genomes]
rs12900789	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12900803	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12901904	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12907373	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12907512	0.81[ASN][1000 genomes]
rs12907720	0.83[ASN][1000 genomes]
rs12909072	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12909183	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12909411	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12914358	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12914768	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13380159	0.81[ASN][1000 genomes]
rs1459199	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1542453	0.83[ASN][1000 genomes]
rs2085667	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2100715	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2125624	0.83[ASN][1000 genomes]
rs28525283	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2925	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34034041	0.81[ASN][1000 genomes]
rs34203834	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34268633	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34508606	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34522308	0.83[ASN][1000 genomes]
rs34929828	0.83[ASN][1000 genomes]
rs34932530	0.80[ASN][1000 genomes]
rs35257316	0.80[ASN][1000 genomes]
rs35474662	0.83[ASN][1000 genomes]
rs35546743	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4369619	0.82[ASN][1000 genomes]
rs4584778	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4591098	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4594225	0.83[ASN][1000 genomes]
rs4779543	0.83[ASN][1000 genomes]
rs4779544	0.84[ASN][1000 genomes]
rs4779899	0.81[ASN][1000 genomes]
rs4779900	0.83[ASN][1000 genomes]
rs4779901	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4779903	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4779905	0.82[ASN][1000 genomes]
rs4779907	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57641116	0.80[ASN][1000 genomes]
rs59059557	0.80[ASN][1000 genomes]
rs59597551	0.80[ASN][1000 genomes]
rs60011586	0.81[ASN][1000 genomes]
rs60461663	0.81[ASN][1000 genomes]
rs67618202	0.82[AMR][1000 genomes]
rs67932861	0.83[ASN][1000 genomes]
rs71401628	0.82[AMR][1000 genomes]
rs71401629	0.82[AMR][1000 genomes]
rs7162339	0.83[ASN][1000 genomes]
rs7164729	0.83[ASN][1000 genomes]
rs7165209	0.81[EUR][1000 genomes]
rs7165528	0.80[ASN][1000 genomes]
rs7166285	0.81[ASN][1000 genomes]
rs7167462	0.83[ASN][1000 genomes]
rs7168828	0.81[ASN][1000 genomes]
rs7169106	0.80[ASN][1000 genomes]
rs7169637	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7170060	0.83[ASN][1000 genomes]
rs7171081	0.83[ASN][1000 genomes]
rs7171868	0.83[ASN][1000 genomes]
rs7172593	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7176033	0.81[EUR][1000 genomes]
rs7176601	0.81[ASN][1000 genomes]
rs7177069	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7177083	0.83[ASN][1000 genomes]
rs7178026	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7183092	0.81[ASN][1000 genomes]
rs7183472	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8023393	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8023394	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8023753	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8024958	0.83[ASN][1000 genomes]
rs8024993	0.82[AMR][1000 genomes]
rs8025014	0.83[AMR][1000 genomes]
rs8025024	0.83[ASN][1000 genomes]
rs8029308	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8029454	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8033168	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8035863	0.81[ASN][1000 genomes]
rs8036502	0.80[ASN][1000 genomes]
rs8036561	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8040203	0.83[ASN][1000 genomes]
rs9672229	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9672933	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9744831	0.87[ASN][1000 genomes]
rs983242	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv1850497	chr1:78596312-78645701	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78584200-78630600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:78611600-78631400	Weak transcription	Liver	Liver
3	chr1:78623600-78634000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:78625200-78636600	Weak transcription	Fetal Intestine Large	intestine
5	chr1:78625200-78644400	Weak transcription	Pancreas	Pancrea
6	chr1:78625400-78634400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:78625800-78635600	Weak transcription	Duodenum Mucosa	Duodenum

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