Variant report

Variant	rs34060203
Chromosome Location	chr22:34304691-34304692
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:34296334..34297959-chr22:34304595..34307456,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1005680	1.00[ASN][1000 genomes]
rs10483174	1.00[ASN][1000 genomes]
rs11703305	1.00[ASN][1000 genomes]
rs11704212	1.00[ASN][1000 genomes]
rs11705063	1.00[ASN][1000 genomes]
rs11912301	1.00[ASN][1000 genomes]
rs11912405	1.00[ASN][1000 genomes]
rs11913804	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11914012	1.00[ASN][1000 genomes]
rs130523	1.00[ASN][1000 genomes]
rs13055480	1.00[ASN][1000 genomes]
rs16993078	1.00[ASN][1000 genomes]
rs16993089	1.00[ASN][1000 genomes]
rs17747599	1.00[ASN][1000 genomes]
rs2413206	1.00[ASN][1000 genomes]
rs2413208	1.00[ASN][1000 genomes]
rs34290110	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34375307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34455747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34597805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34871405	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35838699	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36006309	1.00[ASN][1000 genomes]
rs55819147	1.00[ASN][1000 genomes]
rs55963330	1.00[ASN][1000 genomes]
rs5749698	1.00[ASN][1000 genomes]
rs5754739	1.00[ASN][1000 genomes]
rs5754746	1.00[ASN][1000 genomes]
rs58634529	1.00[ASN][1000 genomes]
rs5999089	1.00[ASN][1000 genomes]
rs67258059	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73154536	1.00[ASN][1000 genomes]
rs73154574	1.00[ASN][1000 genomes]
rs73170572	1.00[ASN][1000 genomes]
rs73170587	1.00[ASN][1000 genomes]
rs73170592	1.00[ASN][1000 genomes]
rs73170593	1.00[ASN][1000 genomes]
rs73170600	1.00[ASN][1000 genomes]
rs73171909	1.00[ASN][1000 genomes]
rs73171910	1.00[ASN][1000 genomes]
rs73171912	1.00[ASN][1000 genomes]
rs73171913	1.00[ASN][1000 genomes]
rs73171915	1.00[ASN][1000 genomes]
rs73171921	1.00[ASN][1000 genomes]
rs73171926	1.00[ASN][1000 genomes]
rs73171927	1.00[ASN][1000 genomes]
rs73171931	1.00[ASN][1000 genomes]
rs738987	1.00[ASN][1000 genomes]
rs738989	1.00[ASN][1000 genomes]
rs933215	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1061736	chr22:34178034-34394918	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv544689	chr22:34178034-34394918	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1066419	chr22:34231732-34553006	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv544690	chr22:34231732-34553006	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3343210	chr22:34236744-34404210	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv588938	chr22:34270568-34307875	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34291200-34312800	Weak transcription	HepG2	liver
2	chr22:34291800-34305000	Weak transcription	Fetal Intestine Small	intestine
3	chr22:34291800-34313800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr22:34293800-34306200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr22:34293800-34315000	Weak transcription	Pancreas	Pancrea
6	chr22:34294200-34310400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr22:34296000-34304800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:34296000-34304800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr22:34296400-34304800	Weak transcription	Brain Hippocampus Middle	brain
10	chr22:34296600-34313400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr22:34297400-34305200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr22:34297400-34313800	Weak transcription	Gastric	stomach
13	chr22:34298200-34305800	Weak transcription	Adipose Nuclei	Adipose
14	chr22:34298400-34307000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr22:34298600-34306600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr22:34298600-34306800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr22:34298800-34310000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr22:34301400-34304800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr22:34302200-34304800	Weak transcription	Stomach Mucosa	stomach
20	chr22:34302800-34306200	Enhancers	Fetal Heart	heart
21	chr22:34303000-34306400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr22:34303200-34306600	Enhancers	Left Ventricle	heart
23	chr22:34303400-34305400	Weak transcription	Right Atrium	heart
24	chr22:34303400-34307600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr22:34303800-34305200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr22:34303800-34314000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr22:34304000-34304800	Enhancers	Rectal Smooth Muscle	rectum
28	chr22:34304000-34305000	Weak transcription	Right Ventricle	heart
29	chr22:34304000-34305400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr22:34304000-34305600	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr22:34304000-34306200	Enhancers	Fetal Stomach	stomach
32	chr22:34304000-34306400	Weak transcription	Esophagus	oesophagus
33	chr22:34304000-34306600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr22:34304200-34304800	Weak transcription	Fetal Brain Female	brain
35	chr22:34304200-34305000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr22:34304200-34305000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr22:34304200-34305200	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr22:34304200-34305600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr22:34304200-34305600	Enhancers	Aorta	Aorta
40	chr22:34304200-34305600	Enhancers	Ovary	ovary
41	chr22:34304200-34306000	Enhancers	Fetal Muscle Trunk	muscle
42	chr22:34304200-34306200	Enhancers	HSMMtube	muscle
43	chr22:34304200-34306600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr22:34304200-34308200	Enhancers	Brain Substantia Nigra	brain
45	chr22:34304200-34308600	Enhancers	Brain Anterior Caudate	brain
46	chr22:34304400-34304800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr22:34304400-34304800	Enhancers	Brain Angular Gyrus	brain
48	chr22:34304400-34304800	Enhancers	Fetal Kidney	kidney
49	chr22:34304400-34305000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr22:34304400-34306200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links