Variant report

Variant	rs34061679
Chromosome Location	chr3:179648674-179648675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13071231	0.96[EUR][1000 genomes]
rs13093050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1404272	0.99[EUR][1000 genomes]
rs17692126	0.96[EUR][1000 genomes]
rs62293070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62293072	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179642400-179651000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:179644200-179652000	Enhancers	Dnd41	blood
3	chr3:179644400-179660000	Weak transcription	Pancreas	Pancrea
4	chr3:179645800-179649200	Enhancers	Brain Hippocampus Middle	brain
5	chr3:179645800-179649200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr3:179646000-179648800	Enhancers	Brain Anterior Caudate	brain
7	chr3:179647800-179648800	Weak transcription	Fetal Brain Male	brain
8	chr3:179648200-179650600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:179648400-179649000	Weak transcription	Fetal Brain Female	brain
10	chr3:179648400-179650600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:179648400-179660000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:179648600-179650800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:179648600-179651600	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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