Variant report

Variant	rs34061863
Chromosome Location	chr4:121613198-121613199
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10518370	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10518371	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10518372	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10518373	0.90[EUR][1000 genomes]
rs10518374	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11723367	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11723445	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11724927	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11724930	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11726937	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728109	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11729628	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11731264	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731617	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11732446	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11732848	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11733879	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11733936	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11734300	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11735265	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11737151	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11737569	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13106533	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13108960	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13109673	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13111403	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13113003	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13114914	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13114990	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13115111	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13117731	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13118612	0.93[EUR][1000 genomes]
rs13119260	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13121457	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13122891	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13128429	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13134136	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13135003	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13135789	0.90[EUR][1000 genomes]
rs13137585	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13137989	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13138000	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13138888	0.90[EUR][1000 genomes]
rs13139281	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13139630	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13143036	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13146556	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13147093	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13148917	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13149281	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13149724	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13152087	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1390555	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1496261	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17051175	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17051185	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17343622	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17344584	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17345304	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17345577	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17345605	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17402740	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17403545	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17403789	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17403845	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17403950	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17403971	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1908696	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1908697	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1908698	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1948542	0.87[AMR][1000 genomes]
rs2047298	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2101890	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34019707	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34026717	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34107387	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34348079	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34354392	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34441682	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34441970	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34537067	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34537501	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34563379	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34592685	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34648640	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34660823	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34769920	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34776884	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34827843	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34883201	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34885860	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34954787	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34980755	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34981703	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35013646	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35045796	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35096905	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35130646	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35142371	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35233728	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35247805	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35251153	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35431307	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35449481	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35513623	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35514445	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35541048	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35579125	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35626362	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35683155	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35691521	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35771660	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35821073	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35833719	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35883135	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35894759	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36007284	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36052384	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36062454	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36132252	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36148945	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4473670	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4555666	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56118203	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66538908	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67061841	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67177335	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67379024	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67410634	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67447771	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67464100	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67521998	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67588490	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67781895	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67799603	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67814940	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67844626	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67870439	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72674402	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72676317	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72676335	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs766623	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7699945	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7700189	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121591200-121620600	Weak transcription	Left Ventricle	heart
2	chr4:121610200-121624600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:121612200-121614400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:121612200-121617000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:121612400-121618200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:121612800-121613800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:121612800-121616800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:121612800-121616800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:121613000-121613200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:121613000-121613600	Weak transcription	Osteobl	bone
11	chr4:121613000-121613800	Weak transcription	NHDF-Ad	bronchial

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