Variant report

Variant	rs34071659
Chromosome Location	chr11:104837324-104837325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11574693	1.00[ASN][1000 genomes]
rs11606407	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3181184	1.00[ASN][1000 genomes]
rs3181327	1.00[ASN][1000 genomes]
rs3181328	1.00[ASN][1000 genomes]
rs3181330	1.00[ASN][1000 genomes]
rs3181334	1.00[ASN][1000 genomes]
rs3181338	1.00[ASN][1000 genomes]
rs45613137	1.00[ASN][1000 genomes]
rs56014702	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56026330	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56126979	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56184015	0.99[EUR][1000 genomes]
rs56390038	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7123277	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7949293	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1040784	chr11:104763797-104855878	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv898356	chr11:104779195-104838471	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv1041081	chr11:104797775-104912458	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104814000-104838200	Weak transcription	Fetal Kidney	kidney
2	chr11:104821800-104837400	Weak transcription	HSMMtube	muscle
3	chr11:104825400-104837400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:104825400-104838200	Weak transcription	HSMM	muscle
5	chr11:104832200-104837400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr11:104833400-104838400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:104833400-104838400	Weak transcription	Fetal Stomach	stomach
8	chr11:104834600-104838200	Weak transcription	Fetal Thymus	thymus
9	chr11:104834600-104839200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:104834800-104838200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:104835800-104837400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:104835800-104837800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr11:104836000-104837400	Enhancers	NHDF-Ad	bronchial
14	chr11:104836000-104837600	Genic enhancers	Primary B cells from peripheral blood	blood
15	chr11:104836000-104837600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:104836000-104837600	Enhancers	Gastric	stomach
17	chr11:104836000-104837600	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr11:104836000-104837600	Enhancers	Small Intestine	intestine
19	chr11:104836000-104837600	Enhancers	Spleen	Spleen
20	chr11:104836000-104837600	Flanking Active TSS	NHEK	skin
21	chr11:104836000-104838800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr11:104836200-104837600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr11:104836200-104837600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:104836200-104837800	Flanking Active TSS	HMEC	breast
25	chr11:104836400-104837600	Enhancers	Stomach Mucosa	stomach
26	chr11:104836400-104837600	Flanking Active TSS	Hela-S3	cervix
27	chr11:104836400-104839600	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr11:104836600-104837400	Enhancers	Fetal Intestine Large	intestine
29	chr11:104836600-104837400	Enhancers	Left Ventricle	heart
30	chr11:104836600-104837400	Enhancers	Right Atrium	heart
31	chr11:104836600-104837600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:104836600-104837600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:104836600-104837600	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr11:104836600-104837600	Enhancers	Thymus	Thymus
35	chr11:104836600-104838200	Enhancers	Fetal Intestine Small	intestine
36	chr11:104836600-104838200	Enhancers	Fetal Lung	lung
37	chr11:104836600-104838200	Enhancers	HepG2	liver
38	chr11:104836600-104838400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr11:104836600-104840400	Active TSS	Rectal Smooth Muscle	rectum
40	chr11:104836800-104837400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:104836800-104837400	Active TSS	Esophagus	oesophagus
42	chr11:104836800-104837400	Enhancers	Lung	lung
43	chr11:104836800-104837400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:104836800-104837600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:104836800-104837600	Enhancers	Placenta Amnion	Placenta Amnion
46	chr11:104836800-104837800	Enhancers	Fetal Muscle Leg	muscle
47	chr11:104836800-104837800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr11:104836800-104838200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr11:104836800-104838400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr11:104836800-104839000	Flanking Active TSS	Primary T cells from cord blood	blood

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