Variant report

Variant	rs34073450
Chromosome Location	chr4:96201812-96201813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96189392..96192259-chr4:96199966..96202499,2	K562	blood:
2	chr4:96195890..96198907-chr4:96201348..96203705,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17023287	1.00[AMR][1000 genomes]
rs58263237	1.00[AMR][1000 genomes]
rs61736724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96182400-96208800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96186000-96220400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96186400-96204000	Weak transcription	Fetal Stomach	stomach
4	chr4:96190200-96206000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:96190600-96220800	Weak transcription	Fetal Kidney	kidney
6	chr4:96194200-96205600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:96194200-96206000	Weak transcription	Brain Anterior Caudate	brain
8	chr4:96194600-96202400	Weak transcription	Brain Substantia Nigra	brain
9	chr4:96194600-96214600	Weak transcription	Brain Angular Gyrus	brain
10	chr4:96196000-96204400	Weak transcription	Lung	lung
11	chr4:96196000-96205200	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:96197800-96204600	Weak transcription	Fetal Brain Male	brain
13	chr4:96198800-96204600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:96198800-96219600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:96199200-96202200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:96199400-96202400	Weak transcription	Fetal Lung	lung
17	chr4:96199400-96203000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:96200000-96209800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:96201000-96226000	Weak transcription	Ovary	ovary
20	chr4:96201400-96202800	Strong transcription	Brain Cingulate Gyrus	brain

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