Variant report

Variant	rs34075516
Chromosome Location	chr1:209582313-209582314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209577431..209579608-chr1:209581964..209584612,3	K562	blood:
2	chr1:209569255..209571972-chr1:209582000..209584014,2	MCF-7	breast:
3	chr1:209581992..209584138-chr1:209585328..209587759,2	MCF-7	breast:
4	chr1:209576552..209581485-chr1:209581592..209585768,7	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12751480	0.93[EUR][1000 genomes]
rs34217130	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209567200-209584600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:209573000-209583000	Weak transcription	NHDF-Ad	bronchial
3	chr1:209573000-209590200	Weak transcription	Fetal Thymus	thymus
4	chr1:209578800-209583600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:209578800-209584800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:209579000-209583000	Weak transcription	Hela-S3	cervix
7	chr1:209579200-209582800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:209579200-209584400	Enhancers	HMEC	breast
9	chr1:209579400-209582600	Weak transcription	A549	lung
10	chr1:209579600-209584000	Weak transcription	HSMMtube	muscle
11	chr1:209579600-209584800	Weak transcription	Fetal Stomach	stomach
12	chr1:209579800-209583000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:209579800-209584600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:209579800-209589200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:209580000-209582600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:209580000-209582600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr1:209580000-209582800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:209580000-209582800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:209580000-209583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:209580000-209583800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:209580000-209584400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:209580000-209584600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:209580000-209584600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:209580000-209584800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr1:209580000-209584800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:209580000-209584800	Weak transcription	NHLF	lung
27	chr1:209580200-209582600	Weak transcription	NH-A	brain
28	chr1:209580200-209583200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:209580200-209584400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:209580200-209584400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:209580200-209584400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr1:209580200-209584800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:209580400-209583000	Weak transcription	Osteobl	bone
34	chr1:209581000-209584600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr1:209581400-209582800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:209581600-209582800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:209581800-209583000	Weak transcription	HSMM	muscle
38	chr1:209582000-209583800	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr1:209582200-209584400	Enhancers	NHEK	skin
40	chr1:209582200-209586800	Enhancers	Primary monocytes fromperipheralblood	blood

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