Variant report

Variant	rs34078187
Chromosome Location	chr5:29191967-29191968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:29191166..29194055-chr5:29197511..29200144,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10051008	0.83[ASN][1000 genomes]
rs10060554	0.83[ASN][1000 genomes]
rs10064419	0.83[ASN][1000 genomes]
rs10072665	0.83[ASN][1000 genomes]
rs10079566	0.83[ASN][1000 genomes]
rs1031855	0.83[ASN][1000 genomes]
rs10472669	0.83[ASN][1000 genomes]
rs10472682	0.83[ASN][1000 genomes]
rs1478865	0.83[ASN][1000 genomes]
rs1478866	0.83[ASN][1000 genomes]
rs4354055	0.83[ASN][1000 genomes]
rs4389701	0.83[ASN][1000 genomes]
rs4484450	0.83[ASN][1000 genomes]
rs4568373	0.83[ASN][1000 genomes]
rs4587086	0.83[ASN][1000 genomes]
rs4590191	0.83[ASN][1000 genomes]
rs4867164	0.83[ASN][1000 genomes]
rs6450671	0.83[ASN][1000 genomes]
rs6450674	0.83[ASN][1000 genomes]
rs6450675	0.83[ASN][1000 genomes]
rs6867116	0.83[ASN][1000 genomes]
rs6873017	0.83[ASN][1000 genomes]
rs6876144	0.83[ASN][1000 genomes]
rs6895131	0.83[ASN][1000 genomes]
rs7446320	0.83[ASN][1000 genomes]
rs7718672	0.80[ASN][1000 genomes]
rs7732730	0.83[ASN][1000 genomes]
rs9292300	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023990	chr5:28917253-29220447	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1022253	chr5:29076460-29195987	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv1030526	chr5:29125802-29204186	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv964827	chr5:29138557-29198352	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv525210	chr5:29176529-29194872	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
11	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29191800-29192200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr5:29191800-29192200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr5:29191800-29192200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr5:29191800-29192200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr5:29191800-29192200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr5:29191800-29192200	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr5:29191800-29192200	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr5:29191800-29192200	Active TSS	Hela-S3	cervix
9	chr5:29191800-29192200	Active TSS	HepG2	liver
10	chr5:29191800-29192600	Active TSS	K562	blood

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