Variant report

Variant	rs34082608
Chromosome Location	chr7:99276667-99276668
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr7:99276567-99277403	HCT-116	colon:	n/a	n/a
2	FOSL2	chr7:99276627-99277105	SK-N-SH	brain:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
3	JUN	chr7:99276657-99277260	K562	blood:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
4	GABPA	chr7:99276604-99277094	A549	lung:	n/a	n/a
5	MAX	chr7:99276534-99277351	A549	lung:	n/a	n/a
6	SP1	chr7:99276510-99277160	A549	lung:	n/a	chr7:99276950-99276964
7	ARID3A	chr7:99276641-99277198	HepG2	liver:	n/a	n/a
8	JUND	chr7:99276613-99277888	K562	blood:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840 chr7:99276829-99276840
9	CEBPB	chr7:99276665-99276873	Hela-S3	cervix:	n/a	n/a
10	FOSL1	chr7:99276654-99277095	K562	blood:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276829-99276840 chr7:99276830-99276840
11	EP300	chr7:99276662-99277949	K562	blood:	n/a	chr7:99276831-99276840
12	MAX	chr7:99276603-99277314	A549	lung:	n/a	n/a
13	JUND	chr7:99276529-99277226	HCT-116	colon:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840 chr7:99276829-99276840
14	FOSL1	chr7:99276557-99277274	HCT-116	colon:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276829-99276840 chr7:99276830-99276840
15	SP1	chr7:99276511-99277135	A549	lung:	n/a	chr7:99276950-99276964
16	JUND	chr7:99276585-99277104	A549	lung:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840 chr7:99276829-99276840
17	FOSL2	chr7:99276597-99277119	A549	lung:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
18	EP300	chr7:99276582-99277062	HepG2	liver:	n/a	chr7:99276831-99276840
19	JUND	chr7:99276634-99277040	HepG2	liver:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840 chr7:99276829-99276840
20	FOS	chr7:99276654-99277017	MCF10A-Er-Src	breast:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
21	JUN	chr7:99276664-99277026	K562	blood:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
22	TCF12	chr7:99276476-99277303	A549	lung:	n/a	chr7:99276550-99276558 chr7:99276960-99276970
23	JUN	chr7:99276642-99277070	K562	blood:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
24	BCL3	chr7:99276549-99277179	A549	lung:	n/a	n/a
25	FOXA2	chr7:99276596-99277099	A549	lung:	n/a	n/a
26	RCOR1	chr7:99276642-99277950	K562	blood:	n/a	n/a
27	NFIC	chr7:99276597-99277021	HepG2	liver:	n/a	n/a
28	POLR2A	chr7:99276615-99277086	HCT-116	colon:	n/a	n/a
29	JUND	chr7:99276611-99277050	HepG2	liver:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840 chr7:99276829-99276840
30	CTCF	chr7:99276520-99276670	SAEC	small airway:	n/a	n/a
31	FOSL2	chr7:99276448-99277274	A549	lung:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
32	TEAD4	chr7:99276555-99277892	K562	blood:	n/a	n/a
33	ATF3	chr7:99276613-99276949	K562	blood:	n/a	n/a
34	MYBL2	chr7:99276560-99277142	HepG2	liver:	n/a	n/a
35	CBX3	chr7:99276604-99277308	K562	blood:	n/a	n/a
36	HDAC2	chr7:99276615-99276953	K562	blood:	n/a	n/a
37	FOSL2	chr7:99276532-99276982	HepG2	liver:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
38	MAZ	chr7:99276639-99277153	K562	blood:	n/a	n/a
39	JUN	chr7:99276380-99277986	K562	blood:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
40	NR2F2	chr7:99276476-99277169	K562	blood:	n/a	n/a
41	FOSL2	chr7:99276515-99277103	HepG2	liver:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
42	POLR2A	chr7:99276667-99277017	HCT-116	colon:	n/a	n/a
43	JUN	chr7:99276646-99277010	K562	blood:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
44	FOS	chr7:99276653-99277015	MCF10A-Er-Src	breast:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840
45	EP300	chr7:99276569-99277088	HepG2	liver:	n/a	chr7:99276831-99276840
46	BCL3	chr7:99276577-99277130	A549	lung:	n/a	n/a
47	PBX3	chr7:99276629-99277009	SK-N-SH	brain:	n/a	n/a
48	JUN	chr7:99276639-99277229	K562	blood:	n/a	chr7:99276830-99276840 chr7:99276830-99276839 chr7:99276832-99276843 chr7:99276830-99276840

No.	Distal block	Cell Line	Cell type
1	chr7:99270833..99272685-chr7:99275092..99276816,2	K562	blood:
2	chr7:99272011..99273927-chr7:99275707..99277510,2	K562	blood:
3	chr7:99275381..99276881-chr7:99296561..99298122,2	MCF-7	breast:
4	chr7:99262294..99263935-chr7:99275134..99276805,2	K562	blood:

Variant related genes	Relation type
CYP3A5	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99243000-99278800	Weak transcription	Brain Angular Gyrus	brain
2	chr7:99243600-99276800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:99255800-99277000	Weak transcription	Fetal Brain Male	brain
4	chr7:99260200-99277000	Weak transcription	Spleen	Spleen
5	chr7:99260600-99276800	Weak transcription	Left Ventricle	heart
6	chr7:99261400-99277000	Weak transcription	Small Intestine	intestine
7	chr7:99263600-99277400	Weak transcription	Aorta	Aorta
8	chr7:99273000-99276800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:99273200-99276800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:99273400-99277000	Transcr. at gene 5' and 3'	Liver	Liver
11	chr7:99273800-99290400	Weak transcription	Primary T cells from cord blood	blood
12	chr7:99274400-99276800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:99275000-99277600	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr7:99275000-99277600	Active TSS	Stomach Mucosa	stomach
15	chr7:99275400-99277400	Active TSS	Fetal Stomach	stomach
16	chr7:99275400-99277800	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr7:99275600-99276800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr7:99275600-99277800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr7:99275800-99276800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:99275800-99277600	Active TSS	Colonic Mucosa	Colon
21	chr7:99275800-99277600	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr7:99276000-99276800	Weak transcription	Lung	lung
23	chr7:99276000-99276800	Active TSS	Pancreas	Pancrea
24	chr7:99276000-99276800	Weak transcription	Psoas Muscle	Psoas
25	chr7:99276000-99277600	Active TSS	Duodenum Mucosa	Duodenum
26	chr7:99276000-99277600	Active TSS	Esophagus	oesophagus
27	chr7:99276000-99277600	Active TSS	Gastric	stomach
28	chr7:99276000-99277600	Flanking Active TSS	A549	lung
29	chr7:99276000-99278200	Enhancers	HepG2	liver
30	chr7:99276200-99276800	Active TSS	Fetal Intestine Large	intestine
31	chr7:99276400-99276800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr7:99276400-99276800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:99276400-99277000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:99276400-99277000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:99276400-99277200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:99276400-99277600	Active TSS	Fetal Lung	lung
37	chr7:99276400-99277800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr7:99276400-99277800	Enhancers	Hela-S3	cervix
39	chr7:99276600-99276800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:99276600-99276800	Active TSS	Adipose Nuclei	Adipose
41	chr7:99276600-99276800	Active TSS	Fetal Intestine Small	intestine
42	chr7:99276600-99277000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:99276600-99277200	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr7:99276600-99277200	Enhancers	HMEC	breast
45	chr7:99276600-99277400	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr7:99276600-99277400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr7:99276600-99277400	Enhancers	Placenta Amnion	Placenta Amnion
48	chr7:99276600-99277400	Flanking Active TSS	NHEK	skin
49	chr7:99276600-99277600	Active TSS	Colon Smooth Muscle	Colon
50	chr7:99276600-99277600	Active TSS	NHDF-Ad	bronchial

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