Variant report

Variant	rs34091873
Chromosome Location	chr2:99372132-99372133
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11899659	0.89[EUR][1000 genomes]
rs12464562	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13012495	0.88[EUR][1000 genomes]
rs17755756	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34852807	0.88[EUR][1000 genomes]
rs4539843	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6711574	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756691	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv520854	chr2:99369757-99373720	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99359600-99374000	Weak transcription	Aorta	Aorta
2	chr2:99361400-99374000	Weak transcription	Pancreas	Pancrea
3	chr2:99362400-99372800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:99365200-99372200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:99365400-99372400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:99365600-99373600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:99365800-99374400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:99366200-99372200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:99366600-99373200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr2:99367400-99374000	Weak transcription	Esophagus	oesophagus
11	chr2:99369600-99373600	Weak transcription	HUVEC	blood vessel
12	chr2:99370800-99373400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:99371000-99373800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:99371200-99373800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:99371200-99374000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr2:99371400-99372200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr2:99371400-99373600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr2:99371600-99372800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:99371600-99374000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:99371600-99374400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:99372000-99372200	Enhancers	HUES64 Cell Line	embryonic stem cell

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