Variant report

Variant	rs34096688
Chromosome Location	chr3:138393935-138393936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138392797..138394326-chr3:138401210..138403084,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13087696	1.00[AFR][1000 genomes]
rs34173962	1.00[AFR][1000 genomes]
rs66470363	1.00[AFR][1000 genomes]
rs66717475	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1013074	chr3:138213166-138737688	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1002612	chr3:138213274-138831792	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv536726	chr3:138213274-138831792	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1009726	chr3:138219923-138737688	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv869205	chr3:138248190-138775288	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv591854	chr3:138348081-138764229	Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv1010514	chr3:138365640-138737688	Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138360800-138407600	Weak transcription	HUVEC	blood vessel
2	chr3:138364400-138459200	Weak transcription	Psoas Muscle	Psoas
3	chr3:138368800-138400200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:138368800-138422600	Weak transcription	Right Atrium	heart
5	chr3:138369000-138493000	Weak transcription	Fetal Lung	lung
6	chr3:138369200-138401600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:138369200-138412800	Weak transcription	Hela-S3	cervix
8	chr3:138369200-138428800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:138369200-138435600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:138374800-138397000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:138375200-138429000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:138377000-138394200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:138381800-138394200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr3:138383000-138395000	Weak transcription	Fetal Brain Female	brain
15	chr3:138383000-138404800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:138383200-138395400	Weak transcription	Colonic Mucosa	Colon
17	chr3:138383200-138412800	Weak transcription	Ovary	ovary
18	chr3:138383200-138448200	Weak transcription	Gastric	stomach
19	chr3:138383400-138395000	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:138383400-138395400	Weak transcription	HSMMtube	muscle
21	chr3:138383400-138426400	Weak transcription	Spleen	Spleen
22	chr3:138383400-138443000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:138383800-138400200	Weak transcription	Fetal Kidney	kidney
24	chr3:138383800-138405400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:138384000-138395000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr3:138384000-138395800	Weak transcription	Fetal Stomach	stomach
27	chr3:138385000-138396200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:138385000-138418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr3:138385800-138394200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:138388400-138399600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:138388600-138395200	Weak transcription	Placenta	Placenta
32	chr3:138389200-138401200	Weak transcription	Brain Substantia Nigra	brain
33	chr3:138389200-138405000	Weak transcription	Small Intestine	intestine
34	chr3:138389400-138394200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:138390800-138459600	Weak transcription	Right Ventricle	heart
36	chr3:138391200-138422000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr3:138391800-138395000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:138392000-138394000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:138392200-138394000	Strong transcription	Primary T cells from cord blood	blood
40	chr3:138392200-138395800	ZNF genes & repeats	GM12878-XiMat	blood
41	chr3:138392200-138405600	Weak transcription	Stomach Mucosa	stomach
42	chr3:138392400-138394200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:138392400-138396200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:138392400-138396400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:138392400-138396400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:138392600-138394000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:138392600-138394000	ZNF genes & repeats	Fetal Intestine Small	intestine
48	chr3:138392600-138394000	Strong transcription	Thymus	Thymus
49	chr3:138392600-138394200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr3:138392600-138394200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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