Variant report

Variant	rs34104273
Chromosome Location	chr17:45258652-45258653
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45213650..45214313-chr17:45258453..45258970,2	MCF-7	breast:
2	chr17:45256968..45259015-chr17:45265544..45267226,2	MCF-7	breast:
3	chr17:45257003..45258810-chr17:45262193..45263942,2	MCF-7	breast:
4	chr17:45257479..45260473-chr2:133018355..133021074,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPRML-7	chr17:45258648-45259003	NONHSAT054290

Variant related genes	Relation type
ENSG00000004897	Chromatin interaction
ENSG00000233786	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv3584	chr17:45246216-45265642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3790	chr17:45247093-45261518	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3344584	chr17:45247298-45258989	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv6873	chr17:45247370-45266575	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3438623	chr17:45249255-45266618	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3437669	chr17:45249306-45259022	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv8330	chr17:45249307-45266621	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv3314728	chr17:45249324-45258982	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3314730	chr17:45249324-45258982	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3431737	chr17:45249325-45259054	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3374428	chr17:45249343-45266580	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	esv3362151	chr17:45249372-45258977	ZNF genes & repeats Strong transcription Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv3450592	chr17:45249392-45258947	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv960117	chr17:45257797-45260714	Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv3387537	chr17:45258496-45259021	ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv3408902	chr17:45258640-45258975	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45249600-45258800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:45249600-45258800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:45249600-45258800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:45249600-45258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:45249600-45258800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr17:45249600-45258800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:45249600-45258800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:45249600-45258800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:45249600-45258800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:45249600-45258800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:45249600-45258800	Weak transcription	Aorta	Aorta
12	chr17:45249600-45258800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr17:45249600-45258800	Weak transcription	Brain Hippocampus Middle	brain
14	chr17:45249600-45258800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr17:45249600-45258800	Weak transcription	Brain Substantia Nigra	brain
16	chr17:45249600-45258800	Weak transcription	Colonic Mucosa	Colon
17	chr17:45249600-45258800	Weak transcription	Esophagus	oesophagus
18	chr17:45249600-45258800	Weak transcription	Fetal Brain Male	brain
19	chr17:45249600-45258800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr17:45249600-45258800	Weak transcription	Gastric	stomach
21	chr17:45249600-45258800	Weak transcription	Pancreas	Pancrea
22	chr17:45249600-45258800	Weak transcription	Psoas Muscle	Psoas
23	chr17:45249600-45258800	Weak transcription	Right Atrium	heart
24	chr17:45249600-45258800	Weak transcription	Small Intestine	intestine
25	chr17:45249600-45258800	Weak transcription	Stomach Mucosa	stomach
26	chr17:45249800-45258800	Strong transcription	Fetal Thymus	thymus
27	chr17:45250000-45258800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:45250200-45258800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr17:45250400-45258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr17:45250400-45258800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr17:45251200-45258800	Strong transcription	Fetal Stomach	stomach
32	chr17:45251200-45259200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:45251200-45260600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr17:45251600-45258800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr17:45251800-45258800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr17:45252600-45259200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr17:45252800-45258800	Strong transcription	Thymus	Thymus
38	chr17:45253000-45258800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr17:45253200-45265200	Weak transcription	Brain Germinal Matrix	brain
40	chr17:45253400-45258800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr17:45254200-45259200	Strong transcription	Osteobl	bone
42	chr17:45254400-45258800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr17:45254600-45258800	Strong transcription	Fetal Intestine Small	intestine
44	chr17:45255000-45258800	Weak transcription	Right Ventricle	heart
45	chr17:45255200-45263200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr17:45255600-45258800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr17:45255600-45258800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr17:45255800-45258800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr17:45256200-45258800	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr17:45256400-45258800	Weak transcription	Ovary	ovary

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