Variant report

Variant	rs34105572
Chromosome Location	chr14:97616599-97616600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12894314	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17191527	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35338766	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35523914	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55639366	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55742637	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72694292	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs74076600	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1048462	chr14:97421360-97804598	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97615400-97616600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:97615400-97616600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:97615400-97616600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:97615400-97616800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr14:97615400-97616800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr14:97615600-97616600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:97615600-97616600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:97615800-97616600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:97615800-97616600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr14:97616200-97616600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:97616200-97616800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:97616200-97617000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr14:97616200-97617000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:97616200-97620800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:97616400-97617000	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links