Variant report

Variant	rs34108727
Chromosome Location	chr7:55831366-55831367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10224225	0.94[EUR][1000 genomes]
rs10234976	0.81[EUR][1000 genomes]
rs10251430	0.94[EUR][1000 genomes]
rs10257652	0.94[EUR][1000 genomes]
rs10278720	1.00[EUR][1000 genomes]
rs10281689	0.94[EUR][1000 genomes]
rs11238379	0.94[EUR][1000 genomes]
rs11981505	0.94[EUR][1000 genomes]
rs11983418	0.94[EUR][1000 genomes]
rs12386674	0.91[EUR][1000 genomes]
rs13225103	1.00[EUR][1000 genomes]
rs13235110	0.91[EUR][1000 genomes]
rs13235311	0.83[EUR][1000 genomes]
rs13235547	0.94[EUR][1000 genomes]
rs13235985	0.87[EUR][1000 genomes]
rs34345557	1.00[EUR][1000 genomes]
rs35965982	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55740807	0.94[EUR][1000 genomes]
rs71547956	0.88[EUR][1000 genomes]
rs71547960	1.00[EUR][1000 genomes]
rs71547962	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv427782	chr7:55703073-56010314	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv888063	chr7:55728476-55899496	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv469612	chr7:55752394-55876163	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv482609	chr7:55752394-55876163	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
12	nsv970836	chr7:55816398-55831636	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	nsv970835	chr7:55816398-55872502	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:55823400-55842600	Weak transcription	Pancreas	Pancrea
2	chr7:55824400-55843400	Weak transcription	Left Ventricle	heart
3	chr7:55828200-55841800	Weak transcription	Spleen	Spleen
4	chr7:55828200-55844400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:55829400-55843200	Weak transcription	Right Ventricle	heart
6	chr7:55829800-55841200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:55829800-55841800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:55830000-55841200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:55830000-55841800	Weak transcription	Liver	Liver
10	chr7:55830200-55841000	Weak transcription	Hela-S3	cervix
11	chr7:55830200-55842600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:55830400-55841000	Weak transcription	Aorta	Aorta
13	chr7:55830800-55832400	Strong transcription	Fetal Stomach	stomach
14	chr7:55831000-55831400	Weak transcription	Gastric	stomach
15	chr7:55831000-55842400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:55831200-55831400	Weak transcription	Fetal Intestine Small	intestine
17	chr7:55831200-55831600	ZNF genes & repeats	Fetal Intestine Large	intestine
18	chr7:55831200-55832200	Strong transcription	Sigmoid Colon	Sigmoid Colon

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