Variant report

Variant	rs34111129
Chromosome Location	chr3:111309868-111309869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11919740	0.90[ASN][1000 genomes]
rs1282090	0.85[ASN][1000 genomes]
rs17202775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17202782	0.82[EUR][1000 genomes]
rs4682051	0.90[ASN][1000 genomes]
rs4682288	0.85[ASN][1000 genomes]
rs4682289	1.00[ASN][1000 genomes]
rs55900677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612391	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9836430	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111295800-111311400	Strong transcription	Fetal Thymus	thymus
2	chr3:111296000-111314400	Strong transcription	Primary T cells from cord blood	blood
3	chr3:111296400-111314600	Strong transcription	Dnd41	blood
4	chr3:111299400-111328600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:111299800-111310400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:111301000-111310200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:111301600-111310800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:111302600-111311800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr3:111306400-111310200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:111306800-111310600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:111306800-111311800	Weak transcription	Fetal Intestine Small	intestine
12	chr3:111307600-111310400	Enhancers	HMEC	breast
13	chr3:111308200-111310000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:111308200-111310200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr3:111308200-111310800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:111308200-111311800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:111308600-111310400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:111308600-111310400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:111308600-111312600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr3:111308600-111313200	Enhancers	A549	lung
21	chr3:111308800-111311200	Enhancers	Primary B cells from peripheral blood	blood
22	chr3:111308800-111312000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr3:111309000-111310800	Strong transcription	Thymus	Thymus
24	chr3:111309000-111311000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr3:111309000-111312800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:111309200-111310000	Flanking Active TSS	NHEK	skin
27	chr3:111309200-111310200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:111309200-111310600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:111309200-111311000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:111309200-111312800	Weak transcription	Hela-S3	cervix
31	chr3:111309400-111310400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:111309400-111310400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:111309400-111310400	Weak transcription	NH-A	brain
34	chr3:111309400-111310400	Weak transcription	Osteobl	bone
35	chr3:111309400-111311000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:111309400-111313400	Weak transcription	HSMMtube	muscle
37	chr3:111309800-111310200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr3:111309800-111310200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:111309800-111310400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
40	chr3:111309800-111310600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr3:111309800-111312400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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