Variant report

Variant	rs34111132
Chromosome Location	chr5:107548365-107548366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11240960	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12519091	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34662628	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9328029	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
2	chr5:107511400-107548400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:107516800-107551400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:107526000-107550800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:107535400-107548600	Weak transcription	Fetal Heart	heart
8	chr5:107537000-107550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:107539400-107551000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:107544200-107550600	Weak transcription	Liver	Liver
11	chr5:107546200-107553200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:107546600-107590800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr5:107547000-107552400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:107547000-107577200	Weak transcription	Fetal Intestine Large	intestine
15	chr5:107547400-107550000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:107548000-107548800	Strong transcription	Left Ventricle	heart
17	chr5:107548000-107550600	Weak transcription	Primary T cells from cord blood	blood
18	chr5:107548200-107548400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr5:107548200-107548400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:107548200-107548400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr5:107548200-107548800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:107548200-107549400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:107548200-107549400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:107548200-107549400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:107548200-107549400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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